Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3832 and Dshi_3833 are separated by 98 nucleotides Dshi_3833 and Dshi_3834 overlap by 11 nucleotides
Dshi_3832: Dshi_3832 - glucosylglycerol-phosphate synthase (RefSeq), at 40,174 to 41,664
_3832
Dshi_3833: Dshi_3833 - phospholipase D/Transphosphatidylase (RefSeq), at 41,763 to 43,181
_3833
Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907
_3834
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 40.855 kb on + strand, within Dshi_3832 at 40.954 kb on - strand, within Dshi_3832 at 41.005 kb on + strand, within Dshi_3832 at 41.005 kb on + strand, within Dshi_3832 at 41.013 kb on - strand, within Dshi_3832 at 41.187 kb on + strand, within Dshi_3832 at 41.209 kb on - strand, within Dshi_3832 at 41.323 kb on + strand, within Dshi_3832 at 41.425 kb on + strand, within Dshi_3832 at 41.550 kb on + strand at 41.586 kb on + strand at 41.587 kb on - strand at 41.606 kb on + strand at 41.708 kb on + strand at 41.727 kb on + strand at 41.727 kb on + strand at 41.842 kb on - strand at 41.985 kb on - strand, within Dshi_3833 at 42.084 kb on + strand, within Dshi_3833 at 42.110 kb on - strand, within Dshi_3833 at 42.110 kb on - strand, within Dshi_3833 at 42.330 kb on + strand, within Dshi_3833 at 42.429 kb on - strand, within Dshi_3833 at 42.456 kb on + strand, within Dshi_3833 at 42.542 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.683 kb on + strand, within Dshi_3833 at 42.684 kb on + strand, within Dshi_3833 at 42.764 kb on - strand, within Dshi_3833 at 42.786 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 43.012 kb on - strand, within Dshi_3833 at 43.047 kb on - strand at 43.049 kb on + strand at 43.218 kb on + strand at 43.218 kb on + strand at 43.226 kb on - strand at 43.380 kb on - strand, within Dshi_3834 at 43.400 kb on - strand, within Dshi_3834 at 43.477 kb on - strand, within Dshi_3834 at 43.496 kb on + strand, within Dshi_3834 at 43.499 kb on - strand, within Dshi_3834 at 43.504 kb on - strand, within Dshi_3834 at 43.667 kb on - strand, within Dshi_3834 at 43.715 kb on + strand, within Dshi_3834 at 43.765 kb on - strand, within Dshi_3834 at 43.779 kb on - strand, within Dshi_3834 at 43.817 kb on - strand, within Dshi_3834 at 43.851 kb on - strand, within Dshi_3834 at 44.003 kb on - strand, within Dshi_3834 at 44.024 kb on - strand, within Dshi_3834 at 44.128 kb on - strand, within Dshi_3834 at 44.138 kb on + strand, within Dshi_3834
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 40,855 + Dshi_3832 0.46 +1.4 40,954 - Dshi_3832 0.52 -0.5 41,005 + Dshi_3832 0.56 -2.1 41,005 + Dshi_3832 0.56 +0.1 41,013 - Dshi_3832 0.56 +0.8 41,187 + Dshi_3832 0.68 +0.4 41,209 - Dshi_3832 0.69 -0.4 41,323 + Dshi_3832 0.77 +3.0 41,425 + Dshi_3832 0.84 +0.4 41,550 + -0.1 41,586 + +0.4 41,587 - +0.7 41,606 + +0.4 41,708 + -2.1 41,727 + -2.4 41,727 + -1.9 41,842 - -1.0 41,985 - Dshi_3833 0.16 +0.4 42,084 + Dshi_3833 0.23 -1.3 42,110 - Dshi_3833 0.24 -0.6 42,110 - Dshi_3833 0.24 -0.8 42,330 + Dshi_3833 0.40 +0.4 42,429 - Dshi_3833 0.47 -2.6 42,456 + Dshi_3833 0.49 +0.9 42,542 + Dshi_3833 0.55 -1.9 42,593 + Dshi_3833 0.58 -0.6 42,593 + Dshi_3833 0.58 +0.4 42,683 + Dshi_3833 0.65 +0.0 42,684 + Dshi_3833 0.65 -1.8 42,764 - Dshi_3833 0.71 +2.4 42,786 - Dshi_3833 0.72 -1.4 42,856 - Dshi_3833 0.77 +0.1 42,856 - Dshi_3833 0.77 -0.6 43,012 - Dshi_3833 0.88 -1.0 43,047 - +0.1 43,049 + +1.4 43,218 + -0.2 43,218 + -0.6 43,226 - -0.6 43,380 - Dshi_3834 0.12 +2.2 43,400 - Dshi_3834 0.13 +0.4 43,477 - Dshi_3834 0.18 -0.1 43,496 + Dshi_3834 0.19 +1.4 43,499 - Dshi_3834 0.19 -0.7 43,504 - Dshi_3834 0.19 -0.6 43,667 - Dshi_3834 0.29 +2.8 43,715 + Dshi_3834 0.31 -0.2 43,765 - Dshi_3834 0.34 -2.1 43,779 - Dshi_3834 0.35 -2.7 43,817 - Dshi_3834 0.37 -1.9 43,851 - Dshi_3834 0.39 -2.6 44,003 - Dshi_3834 0.48 -1.9 44,024 - Dshi_3834 0.49 -1.6 44,128 - Dshi_3834 0.55 -0.5 44,138 + Dshi_3834 0.56 -1.3
Or see this region's nucleotide sequence