Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3828 and Dshi_3829 are separated by 127 nucleotides Dshi_3829 and Dshi_3830 are separated by 305 nucleotides Dshi_3830 and Dshi_3831 overlap by 4 nucleotides Dshi_3831 and Dshi_3832 are separated by 11 nucleotides
Dshi_3828: Dshi_3828 - putative transcriptional regulator, PaaX family (RefSeq), at 36,567 to 37,361
_3828
Dshi_3829: Dshi_3829 - hypothetical protein (RefSeq), at 37,489 to 37,941
_3829
Dshi_3830: Dshi_3830 - Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq), at 38,247 to 39,386
_3830
Dshi_3831: Dshi_3831 - sucrose-6F-phosphate phosphohydrolase (RefSeq), at 39,383 to 40,162
_3831
Dshi_3832: Dshi_3832 - glucosylglycerol-phosphate synthase (RefSeq), at 40,174 to 41,664
_3832
Position (kb) 38
39
40 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 37.255 kb on + strand, within Dshi_3828 at 37.263 kb on - strand, within Dshi_3828 at 37.270 kb on + strand, within Dshi_3828 at 37.365 kb on - strand at 37.454 kb on - strand at 37.511 kb on + strand at 37.517 kb on + strand at 37.568 kb on + strand, within Dshi_3829 at 37.586 kb on + strand, within Dshi_3829 at 37.594 kb on - strand, within Dshi_3829 at 37.643 kb on + strand, within Dshi_3829 at 37.653 kb on + strand, within Dshi_3829 at 37.694 kb on - strand, within Dshi_3829 at 37.748 kb on + strand, within Dshi_3829 at 37.756 kb on - strand, within Dshi_3829 at 37.879 kb on + strand, within Dshi_3829 at 37.981 kb on + strand at 37.989 kb on - strand at 38.109 kb on + strand at 38.136 kb on - strand at 38.156 kb on - strand at 38.212 kb on - strand at 38.352 kb on + strand at 38.434 kb on + strand, within Dshi_3830 at 38.442 kb on - strand, within Dshi_3830 at 38.456 kb on - strand, within Dshi_3830 at 38.486 kb on - strand, within Dshi_3830 at 38.644 kb on - strand, within Dshi_3830 at 38.767 kb on - strand, within Dshi_3830 at 38.789 kb on - strand, within Dshi_3830 at 38.883 kb on + strand, within Dshi_3830 at 39.137 kb on + strand, within Dshi_3830 at 39.221 kb on - strand, within Dshi_3830 at 39.221 kb on - strand, within Dshi_3830 at 39.231 kb on - strand, within Dshi_3830 at 39.277 kb on - strand at 39.277 kb on - strand at 39.399 kb on - strand at 39.406 kb on - strand at 39.444 kb on - strand at 39.454 kb on - strand at 39.595 kb on + strand, within Dshi_3831 at 39.703 kb on + strand, within Dshi_3831 at 39.727 kb on + strand, within Dshi_3831 at 39.816 kb on + strand, within Dshi_3831 at 39.887 kb on - strand, within Dshi_3831 at 40.039 kb on - strand, within Dshi_3831 at 40.157 kb on + strand at 40.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 37,255 + Dshi_3828 0.87 +1.0 37,263 - Dshi_3828 0.88 -0.6 37,270 + Dshi_3828 0.88 -0.9 37,365 - +0.4 37,454 - +0.4 37,511 + +0.4 37,517 + -1.7 37,568 + Dshi_3829 0.17 -3.7 37,586 + Dshi_3829 0.21 -1.2 37,594 - Dshi_3829 0.23 -0.8 37,643 + Dshi_3829 0.34 +0.4 37,653 + Dshi_3829 0.36 -1.2 37,694 - Dshi_3829 0.45 -2.4 37,748 + Dshi_3829 0.57 -3.4 37,756 - Dshi_3829 0.59 +0.0 37,879 + Dshi_3829 0.86 +2.4 37,981 + +1.4 37,989 - -3.5 38,109 + +0.2 38,136 - -1.6 38,156 - -2.6 38,212 - +1.4 38,352 + -4.4 38,434 + Dshi_3830 0.16 -3.5 38,442 - Dshi_3830 0.17 +0.4 38,456 - Dshi_3830 0.18 -4.1 38,486 - Dshi_3830 0.21 -1.9 38,644 - Dshi_3830 0.35 -0.5 38,767 - Dshi_3830 0.46 +0.4 38,789 - Dshi_3830 0.48 -1.4 38,883 + Dshi_3830 0.56 +0.4 39,137 + Dshi_3830 0.78 -0.3 39,221 - Dshi_3830 0.85 +1.0 39,221 - Dshi_3830 0.85 -1.6 39,231 - Dshi_3830 0.86 -3.1 39,277 - -2.6 39,277 - +1.4 39,399 - -1.4 39,406 - +0.4 39,444 - -0.9 39,454 - +1.4 39,595 + Dshi_3831 0.27 -2.4 39,703 + Dshi_3831 0.41 +1.4 39,727 + Dshi_3831 0.44 -2.6 39,816 + Dshi_3831 0.56 -1.5 39,887 - Dshi_3831 0.65 -3.8 40,039 - Dshi_3831 0.84 -1.8 40,157 + -2.9 40,169 + +1.4
Or see this region's nucleotide sequence