Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3814 and Dshi_3815 are separated by 29 nucleotides Dshi_3815 and Dshi_3816 are separated by 2 nucleotides Dshi_3816 and Dshi_3817 are separated by 125 nucleotides
Dshi_3814: Dshi_3814 - beta-lactamase domain protein (RefSeq), at 22,097 to 23,047
_3814
Dshi_3815: Dshi_3815 - monooxygenase FAD-binding (RefSeq), at 23,077 to 24,702
_3815
Dshi_3816: Dshi_3816 - hypothetical protein (RefSeq), at 24,705 to 24,890
_3816
Dshi_3817: Dshi_3817 - beta-ketoadipyl CoA thiolase (RefSeq), at 25,016 to 26,218
_3817
Position (kb) 23
24
25 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 22.083 kb on - strand at 22.107 kb on - strand at 22.123 kb on - strand at 22.128 kb on + strand at 22.147 kb on - strand at 22.225 kb on - strand, within Dshi_3814 at 22.241 kb on - strand, within Dshi_3814 at 22.244 kb on + strand, within Dshi_3814 at 22.330 kb on - strand, within Dshi_3814 at 22.397 kb on - strand, within Dshi_3814 at 22.466 kb on - strand, within Dshi_3814 at 22.498 kb on + strand, within Dshi_3814 at 22.501 kb on - strand, within Dshi_3814 at 22.715 kb on + strand, within Dshi_3814 at 22.715 kb on + strand, within Dshi_3814 at 22.723 kb on - strand, within Dshi_3814 at 22.723 kb on - strand, within Dshi_3814 at 22.876 kb on + strand, within Dshi_3814 at 22.955 kb on + strand at 22.996 kb on + strand at 23.004 kb on - strand at 23.102 kb on + strand at 23.183 kb on - strand at 23.189 kb on + strand at 23.259 kb on - strand, within Dshi_3815 at 23.267 kb on + strand, within Dshi_3815 at 23.302 kb on + strand, within Dshi_3815 at 23.310 kb on - strand, within Dshi_3815 at 23.320 kb on + strand, within Dshi_3815 at 23.320 kb on + strand, within Dshi_3815 at 23.328 kb on - strand, within Dshi_3815 at 23.343 kb on - strand, within Dshi_3815 at 23.426 kb on - strand, within Dshi_3815 at 23.458 kb on + strand, within Dshi_3815 at 23.493 kb on + strand, within Dshi_3815 at 23.873 kb on - strand, within Dshi_3815 at 23.897 kb on - strand, within Dshi_3815 at 23.912 kb on + strand, within Dshi_3815 at 23.917 kb on + strand, within Dshi_3815 at 23.920 kb on - strand, within Dshi_3815 at 23.949 kb on - strand, within Dshi_3815 at 23.974 kb on - strand, within Dshi_3815 at 24.135 kb on - strand, within Dshi_3815 at 24.137 kb on - strand, within Dshi_3815 at 24.139 kb on + strand, within Dshi_3815 at 24.157 kb on - strand, within Dshi_3815 at 24.165 kb on + strand, within Dshi_3815 at 24.165 kb on + strand, within Dshi_3815 at 24.173 kb on - strand, within Dshi_3815 at 24.259 kb on + strand, within Dshi_3815 at 24.267 kb on - strand, within Dshi_3815 at 24.439 kb on - strand, within Dshi_3815 at 24.632 kb on - strand at 24.721 kb on - strand at 24.721 kb on - strand at 25.144 kb on + strand, within Dshi_3817 at 25.153 kb on - strand, within Dshi_3817 at 25.313 kb on - strand, within Dshi_3817 at 25.409 kb on + strand, within Dshi_3817 at 25.410 kb on + strand, within Dshi_3817 at 25.430 kb on + strand, within Dshi_3817 at 25.695 kb on - strand, within Dshi_3817
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 22,083 - +0.6 22,107 - -0.6 22,123 - -0.4 22,128 + -1.9 22,147 - -1.4 22,225 - Dshi_3814 0.13 -2.1 22,241 - Dshi_3814 0.15 -1.3 22,244 + Dshi_3814 0.15 -0.8 22,330 - Dshi_3814 0.25 -4.3 22,397 - Dshi_3814 0.32 +0.0 22,466 - Dshi_3814 0.39 -1.3 22,498 + Dshi_3814 0.42 +0.3 22,501 - Dshi_3814 0.42 -2.4 22,715 + Dshi_3814 0.65 +1.4 22,715 + Dshi_3814 0.65 +0.4 22,723 - Dshi_3814 0.66 +1.4 22,723 - Dshi_3814 0.66 -3.1 22,876 + Dshi_3814 0.82 +1.0 22,955 + -2.7 22,996 + +1.4 23,004 - -1.1 23,102 + -0.2 23,183 - -0.0 23,189 + -0.9 23,259 - Dshi_3815 0.11 +0.4 23,267 + Dshi_3815 0.12 +1.0 23,302 + Dshi_3815 0.14 -2.5 23,310 - Dshi_3815 0.14 -2.1 23,320 + Dshi_3815 0.15 -0.7 23,320 + Dshi_3815 0.15 -1.1 23,328 - Dshi_3815 0.15 -2.9 23,343 - Dshi_3815 0.16 -2.4 23,426 - Dshi_3815 0.21 -3.5 23,458 + Dshi_3815 0.23 -3.6 23,493 + Dshi_3815 0.26 -0.7 23,873 - Dshi_3815 0.49 +0.4 23,897 - Dshi_3815 0.50 -1.1 23,912 + Dshi_3815 0.51 +0.4 23,917 + Dshi_3815 0.52 -3.7 23,920 - Dshi_3815 0.52 -0.7 23,949 - Dshi_3815 0.54 +1.0 23,974 - Dshi_3815 0.55 -0.1 24,135 - Dshi_3815 0.65 +0.8 24,137 - Dshi_3815 0.65 +0.8 24,139 + Dshi_3815 0.65 -4.6 24,157 - Dshi_3815 0.66 -0.6 24,165 + Dshi_3815 0.67 +1.0 24,165 + Dshi_3815 0.67 +0.4 24,173 - Dshi_3815 0.67 +3.0 24,259 + Dshi_3815 0.73 +1.4 24,267 - Dshi_3815 0.73 -1.1 24,439 - Dshi_3815 0.84 +0.8 24,632 - -0.1 24,721 - -1.1 24,721 - +0.4 25,144 + Dshi_3817 0.11 -3.6 25,153 - Dshi_3817 0.11 -1.4 25,313 - Dshi_3817 0.25 +0.4 25,409 + Dshi_3817 0.33 -0.7 25,410 + Dshi_3817 0.33 -1.1 25,430 + Dshi_3817 0.34 +0.4 25,695 - Dshi_3817 0.56 +0.0
Or see this region's nucleotide sequence