Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3800

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3798 and Dshi_3799 are separated by 125 nucleotidesDshi_3799 and Dshi_3800 are separated by 4 nucleotidesDshi_3800 and Dshi_3801 are separated by 58 nucleotides Dshi_3798: Dshi_3798 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq), at 6,416 to 6,958 _3798 Dshi_3799: Dshi_3799 - HupE/UreJ protein (RefSeq), at 7,084 to 7,680 _3799 Dshi_3800: Dshi_3800 - hypothetical protein (RefSeq), at 7,685 to 8,299 _3800 Dshi_3801: Dshi_3801 - catalase/peroxidase HPI (RefSeq), at 8,358 to 10,535 _3801 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.761 kb on - strand, within Dshi_3798at 6.909 kb on - strandat 6.914 kb on - strandat 6.965 kb on + strandat 7.195 kb on + strand, within Dshi_3799at 7.251 kb on + strand, within Dshi_3799at 7.393 kb on + strand, within Dshi_3799at 7.633 kb on - strandat 7.690 kb on - strandat 7.874 kb on - strand, within Dshi_3800at 8.039 kb on + strand, within Dshi_3800at 8.043 kb on + strand, within Dshi_3800at 8.238 kb on - strandat 8.377 kb on - strandat 8.457 kb on - strandat 8.515 kb on + strandat 8.599 kb on - strand, within Dshi_3801at 8.612 kb on + strand, within Dshi_3801at 8.890 kb on + strand, within Dshi_3801at 9.092 kb on + strand, within Dshi_3801at 9.100 kb on - strand, within Dshi_3801at 9.100 kb on - strand, within Dshi_3801at 9.169 kb on + strand, within Dshi_3801at 9.169 kb on + strand, within Dshi_3801at 9.229 kb on - strand, within Dshi_3801at 9.234 kb on - strand, within Dshi_3801at 9.264 kb on - strand, within Dshi_3801

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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6,761 - Dshi_3798 0.64 -2.4
6,909 - -1.6
6,914 - -1.7
6,965 + -2.1
7,195 + Dshi_3799 0.19 -2.9
7,251 + Dshi_3799 0.28 -1.8
7,393 + Dshi_3799 0.52 -0.6
7,633 - -1.1
7,690 - -0.8
7,874 - Dshi_3800 0.31 +2.0
8,039 + Dshi_3800 0.58 -3.1
8,043 + Dshi_3800 0.58 +0.0
8,238 - -1.1
8,377 - -1.1
8,457 - +0.9
8,515 + -1.6
8,599 - Dshi_3801 0.11 +0.4
8,612 + Dshi_3801 0.12 -0.4
8,890 + Dshi_3801 0.24 -2.4
9,092 + Dshi_3801 0.34 -2.7
9,100 - Dshi_3801 0.34 +0.8
9,100 - Dshi_3801 0.34 +2.0
9,169 + Dshi_3801 0.37 +1.7
9,169 + Dshi_3801 0.37 -0.6
9,229 - Dshi_3801 0.40 +0.7
9,234 - Dshi_3801 0.40 -1.1
9,264 - Dshi_3801 0.42 -0.6

Or see this region's nucleotide sequence