Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3624 and Dshi_3625 are separated by 69 nucleotides Dshi_3625 and Dshi_3626 overlap by 11 nucleotides Dshi_3626 and Dshi_3627 overlap by 29 nucleotides Dshi_3627 and Dshi_3628 are separated by 353 nucleotides
Dshi_3624: Dshi_3624 - cation efflux protein (RefSeq), at 25,911 to 26,531
_3624
Dshi_3625: Dshi_3625 - hypothetical protein (RefSeq), at 26,601 to 27,164
_3625
Dshi_3626: Dshi_3626 - cation diffusion facilitator family transporter (RefSeq), at 27,154 to 28,119
_3626
Dshi_3627: Dshi_3627 - hypothetical protein (RefSeq), at 28,091 to 28,402
_3627
Dshi_3628: Dshi_3628 - hypothetical protein (RefSeq), at 28,756 to 29,451
_3628
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 28.731 kb on + strand at 28.744 kb on - strand at 28.746 kb on + strand at 28.754 kb on - strand at 28.777 kb on + strand at 28.793 kb on + strand at 28.793 kb on + strand at 28.793 kb on - strand at 28.814 kb on + strand at 28.824 kb on + strand at 28.824 kb on + strand at 28.824 kb on + strand at 28.832 kb on - strand at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.839 kb on + strand, within Dshi_3628 at 28.845 kb on + strand, within Dshi_3628 at 28.845 kb on + strand, within Dshi_3628 at 28.853 kb on - strand, within Dshi_3628 at 28.853 kb on - strand, within Dshi_3628 at 28.869 kb on + strand, within Dshi_3628 at 28.870 kb on + strand, within Dshi_3628 at 28.870 kb on + strand, within Dshi_3628 at 28.872 kb on + strand, within Dshi_3628 at 28.878 kb on - strand, within Dshi_3628 at 28.878 kb on - strand, within Dshi_3628 at 28.878 kb on - strand, within Dshi_3628 at 28.879 kb on - strand, within Dshi_3628 at 28.900 kb on + strand, within Dshi_3628 at 28.901 kb on - strand, within Dshi_3628 at 28.974 kb on + strand, within Dshi_3628 at 28.980 kb on + strand, within Dshi_3628 at 28.997 kb on + strand, within Dshi_3628 at 28.997 kb on + strand, within Dshi_3628 at 29.001 kb on + strand, within Dshi_3628 at 29.005 kb on - strand, within Dshi_3628 at 29.022 kb on + strand, within Dshi_3628 at 29.022 kb on + strand, within Dshi_3628 at 29.040 kb on - strand, within Dshi_3628 at 29.066 kb on + strand, within Dshi_3628 at 29.066 kb on + strand, within Dshi_3628 at 29.066 kb on + strand, within Dshi_3628 at 29.074 kb on - strand, within Dshi_3628 at 29.092 kb on + strand, within Dshi_3628 at 29.100 kb on - strand, within Dshi_3628 at 29.104 kb on + strand, within Dshi_3628
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 28,731 + +0.6 28,744 - -0.3 28,746 + -3.0 28,754 - -1.6 28,777 + +0.5 28,793 + -0.7 28,793 + +2.2 28,793 - +1.1 28,814 + -0.2 28,824 + +0.5 28,824 + -0.9 28,824 + -0.1 28,832 - +1.2 28,832 - Dshi_3628 0.11 -0.4 28,832 - Dshi_3628 0.11 +0.6 28,832 - Dshi_3628 0.11 -1.8 28,832 - Dshi_3628 0.11 -1.9 28,832 - Dshi_3628 0.11 -0.2 28,832 - Dshi_3628 0.11 +0.2 28,832 - Dshi_3628 0.11 -1.4 28,832 - Dshi_3628 0.11 -0.8 28,832 - Dshi_3628 0.11 -0.7 28,832 - Dshi_3628 0.11 +2.3 28,839 + Dshi_3628 0.12 +0.5 28,845 + Dshi_3628 0.13 +2.0 28,845 + Dshi_3628 0.13 -0.9 28,853 - Dshi_3628 0.14 -0.7 28,853 - Dshi_3628 0.14 -1.2 28,869 + Dshi_3628 0.16 -0.1 28,870 + Dshi_3628 0.16 +3.4 28,870 + Dshi_3628 0.16 -0.5 28,872 + Dshi_3628 0.17 -0.1 28,878 - Dshi_3628 0.18 -0.3 28,878 - Dshi_3628 0.18 +0.4 28,878 - Dshi_3628 0.18 +0.5 28,879 - Dshi_3628 0.18 -0.5 28,900 + Dshi_3628 0.21 +0.8 28,901 - Dshi_3628 0.21 +4.0 28,974 + Dshi_3628 0.31 +0.5 28,980 + Dshi_3628 0.32 -0.7 28,997 + Dshi_3628 0.35 -0.2 28,997 + Dshi_3628 0.35 -0.8 29,001 + Dshi_3628 0.35 -0.1 29,005 - Dshi_3628 0.36 -1.0 29,022 + Dshi_3628 0.38 -0.4 29,022 + Dshi_3628 0.38 -1.7 29,040 - Dshi_3628 0.41 +0.8 29,066 + Dshi_3628 0.45 +0.5 29,066 + Dshi_3628 0.45 +1.2 29,066 + Dshi_3628 0.45 +0.5 29,074 - Dshi_3628 0.46 +2.6 29,092 + Dshi_3628 0.48 +0.7 29,100 - Dshi_3628 0.49 +1.5 29,104 + Dshi_3628 0.50 +1.6
Or see this region's nucleotide sequence