Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3587

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3585 and Dshi_3586 overlap by 4 nucleotidesDshi_3586 and Dshi_3587 are separated by 13 nucleotidesDshi_3587 and Dshi_3588 are separated by 3 nucleotidesDshi_3588 and Dshi_3589 are separated by 9 nucleotides Dshi_3585: Dshi_3585 - ABC transporter related (RefSeq), at 3,776,138 to 3,776,902 _3585 Dshi_3586: Dshi_3586 - Cell envelope biogenesis YhbN (RefSeq), at 3,776,899 to 3,777,411 _3586 Dshi_3587: Dshi_3587 - hypothetical protein (RefSeq), at 3,777,425 to 3,778,027 _3587 Dshi_3588: Dshi_3588 - KpsF/GutQ family protein (RefSeq), at 3,778,031 to 3,778,993 _3588 Dshi_3589: Dshi_3589 - 3'-5' exonuclease (RefSeq), at 3,779,003 to 3,779,614 _3589 Position (kb) 3777 3778 3779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3776.916 kb on + strandat 3777.435 kb on + strandat 3777.443 kb on - strandat 3777.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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3,776,916 + -3.1
3,777,435 + -0.0
3,777,443 - +2.6
3,777,464 - -1.8

Or see this region's nucleotide sequence