Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3571 and Dshi_3572 are separated by 165 nucleotides Dshi_3572 and Dshi_3573 are separated by 30 nucleotides Dshi_3573 and Dshi_3574 are separated by 153 nucleotides Dshi_3574 and Dshi_3575 overlap by 1 nucleotides
Dshi_3571: Dshi_3571 - chaperone protein DnaK (RefSeq), at 3,760,594 to 3,762,513
_3571
Dshi_3572: Dshi_3572 - 2OG-Fe(II) oxygenase (RefSeq), at 3,762,679 to 3,763,314
_3572
Dshi_3573: Dshi_3573 - ABC-2 type transporter (RefSeq), at 3,763,345 to 3,764,166
_3573
Dshi_3574: Dshi_3574 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,764,320 to 3,765,117
_3574
Dshi_3575: Dshi_3575 - 3-deoxy-D-manno-octulosonate cytidylyltransferase (RefSeq), at 3,765,117 to 3,765,917
_3575
Position (kb)
3763
3764
3765 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3762.653 kb on + strand at 3762.669 kb on - strand at 3762.671 kb on + strand at 3762.671 kb on + strand at 3762.759 kb on - strand, within Dshi_3572 at 3762.760 kb on - strand, within Dshi_3572 at 3762.784 kb on + strand, within Dshi_3572 at 3762.791 kb on - strand, within Dshi_3572 at 3762.798 kb on - strand, within Dshi_3572 at 3762.849 kb on + strand, within Dshi_3572 at 3762.863 kb on + strand, within Dshi_3572 at 3762.907 kb on + strand, within Dshi_3572 at 3762.915 kb on - strand, within Dshi_3572 at 3762.915 kb on - strand, within Dshi_3572 at 3762.915 kb on - strand, within Dshi_3572 at 3762.927 kb on - strand, within Dshi_3572 at 3762.986 kb on + strand, within Dshi_3572 at 3762.998 kb on - strand, within Dshi_3572 at 3763.007 kb on + strand, within Dshi_3572 at 3763.044 kb on + strand, within Dshi_3572 at 3763.054 kb on + strand, within Dshi_3572 at 3763.054 kb on + strand, within Dshi_3572 at 3763.062 kb on - strand, within Dshi_3572 at 3763.062 kb on - strand, within Dshi_3572 at 3763.068 kb on - strand, within Dshi_3572 at 3763.082 kb on + strand, within Dshi_3572 at 3763.128 kb on + strand, within Dshi_3572 at 3763.138 kb on + strand, within Dshi_3572 at 3763.178 kb on - strand, within Dshi_3572 at 3763.242 kb on + strand, within Dshi_3572 at 3763.256 kb on + strand at 3763.284 kb on - strand at 3763.318 kb on - strand at 3763.318 kb on - strand at 3763.331 kb on + strand at 3763.339 kb on - strand at 3763.339 kb on - strand at 3763.358 kb on + strand at 3763.444 kb on + strand, within Dshi_3573 at 3763.444 kb on + strand, within Dshi_3573 at 3763.492 kb on + strand, within Dshi_3573 at 3763.505 kb on + strand, within Dshi_3573 at 3763.526 kb on - strand, within Dshi_3573 at 3763.540 kb on + strand, within Dshi_3573 at 3763.578 kb on - strand, within Dshi_3573 at 3763.619 kb on + strand, within Dshi_3573 at 3763.627 kb on - strand, within Dshi_3573 at 3763.627 kb on - strand, within Dshi_3573 at 3763.688 kb on - strand, within Dshi_3573 at 3763.702 kb on + strand, within Dshi_3573 at 3763.715 kb on + strand, within Dshi_3573 at 3763.753 kb on - strand, within Dshi_3573 at 3763.835 kb on + strand, within Dshi_3573 at 3763.860 kb on + strand, within Dshi_3573 at 3763.882 kb on + strand, within Dshi_3573 at 3763.882 kb on + strand, within Dshi_3573 at 3763.882 kb on + strand, within Dshi_3573 at 3763.882 kb on + strand, within Dshi_3573 at 3763.882 kb on + strand, within Dshi_3573 at 3763.890 kb on - strand, within Dshi_3573 at 3763.890 kb on - strand, within Dshi_3573 at 3763.890 kb on - strand, within Dshi_3573 at 3763.923 kb on + strand, within Dshi_3573 at 3763.973 kb on - strand, within Dshi_3573 at 3764.005 kb on + strand, within Dshi_3573 at 3764.008 kb on + strand, within Dshi_3573 at 3764.008 kb on - strand, within Dshi_3573 at 3764.053 kb on + strand, within Dshi_3573 at 3764.053 kb on + strand, within Dshi_3573 at 3764.099 kb on + strand at 3764.128 kb on - strand at 3764.177 kb on - strand at 3764.183 kb on - strand at 3764.213 kb on + strand at 3764.221 kb on - strand at 3764.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,762,653 + -3.4 3,762,669 - -1.8 3,762,671 + +0.6 3,762,671 + -0.4 3,762,759 - Dshi_3572 0.13 -1.9 3,762,760 - Dshi_3572 0.13 +0.2 3,762,784 + Dshi_3572 0.17 -3.3 3,762,791 - Dshi_3572 0.18 -2.9 3,762,798 - Dshi_3572 0.19 -1.1 3,762,849 + Dshi_3572 0.27 +1.6 3,762,863 + Dshi_3572 0.29 -0.3 3,762,907 + Dshi_3572 0.36 +0.6 3,762,915 - Dshi_3572 0.37 +2.2 3,762,915 - Dshi_3572 0.37 -2.1 3,762,915 - Dshi_3572 0.37 -3.8 3,762,927 - Dshi_3572 0.39 -0.9 3,762,986 + Dshi_3572 0.48 -1.5 3,762,998 - Dshi_3572 0.50 -2.0 3,763,007 + Dshi_3572 0.52 -2.6 3,763,044 + Dshi_3572 0.57 +0.6 3,763,054 + Dshi_3572 0.59 +0.6 3,763,054 + Dshi_3572 0.59 -2.9 3,763,062 - Dshi_3572 0.60 -0.4 3,763,062 - Dshi_3572 0.60 -1.0 3,763,068 - Dshi_3572 0.61 -1.2 3,763,082 + Dshi_3572 0.63 -2.5 3,763,128 + Dshi_3572 0.71 -0.5 3,763,138 + Dshi_3572 0.72 -0.0 3,763,178 - Dshi_3572 0.78 -0.7 3,763,242 + Dshi_3572 0.89 +2.9 3,763,256 + -2.0 3,763,284 - -1.8 3,763,318 - -2.6 3,763,318 - -1.3 3,763,331 + +1.7 3,763,339 - -1.0 3,763,339 - -0.8 3,763,358 + -3.3 3,763,444 + Dshi_3573 0.12 -2.4 3,763,444 + Dshi_3573 0.12 -0.8 3,763,492 + Dshi_3573 0.18 +0.6 3,763,505 + Dshi_3573 0.19 -0.4 3,763,526 - Dshi_3573 0.22 -3.0 3,763,540 + Dshi_3573 0.24 +2.9 3,763,578 - Dshi_3573 0.28 -1.7 3,763,619 + Dshi_3573 0.33 -0.4 3,763,627 - Dshi_3573 0.34 -0.0 3,763,627 - Dshi_3573 0.34 -3.6 3,763,688 - Dshi_3573 0.42 -2.6 3,763,702 + Dshi_3573 0.43 -1.0 3,763,715 + Dshi_3573 0.45 +2.2 3,763,753 - Dshi_3573 0.50 -1.7 3,763,835 + Dshi_3573 0.60 -1.5 3,763,860 + Dshi_3573 0.63 -0.5 3,763,882 + Dshi_3573 0.65 -1.4 3,763,882 + Dshi_3573 0.65 +0.6 3,763,882 + Dshi_3573 0.65 -2.3 3,763,882 + Dshi_3573 0.65 -0.7 3,763,882 + Dshi_3573 0.65 -1.4 3,763,890 - Dshi_3573 0.66 -0.6 3,763,890 - Dshi_3573 0.66 -3.0 3,763,890 - Dshi_3573 0.66 -1.4 3,763,923 + Dshi_3573 0.70 -0.8 3,763,973 - Dshi_3573 0.76 -2.5 3,764,005 + Dshi_3573 0.80 -1.0 3,764,008 + Dshi_3573 0.81 -0.6 3,764,008 - Dshi_3573 0.81 +2.3 3,764,053 + Dshi_3573 0.86 -3.5 3,764,053 + Dshi_3573 0.86 -2.2 3,764,099 + -1.8 3,764,128 - +0.6 3,764,177 - +0.6 3,764,183 - +0.1 3,764,213 + -2.8 3,764,221 - -1.4 3,764,305 + -0.7
Or see this region's nucleotide sequence