Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3233

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3231 and Dshi_3232 are separated by 384 nucleotidesDshi_3232 and Dshi_3233 are separated by 3 nucleotidesDshi_3233 and Dshi_3234 overlap by 4 nucleotides Dshi_3231: Dshi_3231 - hypothetical protein (RefSeq), at 3,399,663 to 3,401,321 _3231 Dshi_3232: Dshi_3232 - hypothetical protein (RefSeq), at 3,401,706 to 3,402,056 _3232 Dshi_3233: Dshi_3233 - NLP/P60 protein (RefSeq), at 3,402,060 to 3,402,899 _3233 Dshi_3234: Dshi_3234 - Leucyl aminopeptidase (RefSeq), at 3,402,896 to 3,404,287 _3234 Position (kb) 3402 3403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3401.191 kb on + strandat 3401.269 kb on - strandat 3401.269 kb on - strandat 3401.355 kb on - strandat 3401.374 kb on + strandat 3401.463 kb on + strandat 3401.594 kb on - strandat 3401.602 kb on + strandat 3401.676 kb on - strandat 3401.676 kb on - strandat 3401.739 kb on + strandat 3401.782 kb on + strand, within Dshi_3232at 3401.790 kb on - strand, within Dshi_3232at 3401.790 kb on - strand, within Dshi_3232at 3401.823 kb on + strand, within Dshi_3232at 3401.949 kb on + strand, within Dshi_3232at 3401.995 kb on + strand, within Dshi_3232at 3402.003 kb on - strand, within Dshi_3232at 3402.050 kb on + strandat 3402.050 kb on + strandat 3402.071 kb on - strandat 3402.138 kb on - strandat 3402.182 kb on - strand, within Dshi_3233at 3402.256 kb on + strand, within Dshi_3233at 3402.485 kb on + strand, within Dshi_3233at 3402.596 kb on - strand, within Dshi_3233at 3402.659 kb on - strand, within Dshi_3233at 3403.109 kb on - strand, within Dshi_3234at 3403.150 kb on + strand, within Dshi_3234at 3403.208 kb on - strand, within Dshi_3234at 3403.215 kb on + strand, within Dshi_3234at 3403.215 kb on + strand, within Dshi_3234at 3403.232 kb on - strand, within Dshi_3234at 3403.257 kb on + strand, within Dshi_3234at 3403.265 kb on - strand, within Dshi_3234at 3403.313 kb on + strand, within Dshi_3234at 3403.453 kb on - strand, within Dshi_3234at 3403.465 kb on + strand, within Dshi_3234at 3403.499 kb on + strand, within Dshi_3234at 3403.507 kb on - strand, within Dshi_3234at 3403.521 kb on + strand, within Dshi_3234at 3403.542 kb on + strand, within Dshi_3234at 3403.648 kb on + strand, within Dshi_3234at 3403.781 kb on - strand, within Dshi_3234

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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3,401,191 + +2.3
3,401,269 - -0.3
3,401,269 - +0.7
3,401,355 - -1.5
3,401,374 + -0.9
3,401,463 + -0.9
3,401,594 - -0.3
3,401,602 + -0.3
3,401,676 - -0.9
3,401,676 - -1.3
3,401,739 + +0.7
3,401,782 + Dshi_3232 0.22 -1.8
3,401,790 - Dshi_3232 0.24 +0.7
3,401,790 - Dshi_3232 0.24 +0.7
3,401,823 + Dshi_3232 0.33 -2.8
3,401,949 + Dshi_3232 0.69 -1.6
3,401,995 + Dshi_3232 0.82 +0.7
3,402,003 - Dshi_3232 0.85 -3.2
3,402,050 + -0.6
3,402,050 + +1.7
3,402,071 - -0.9
3,402,138 - +0.7
3,402,182 - Dshi_3233 0.15 +0.7
3,402,256 + Dshi_3233 0.23 -0.2
3,402,485 + Dshi_3233 0.51 -3.6
3,402,596 - Dshi_3233 0.64 -1.6
3,402,659 - Dshi_3233 0.71 -0.3
3,403,109 - Dshi_3234 0.15 +2.7
3,403,150 + Dshi_3234 0.18 -2.2
3,403,208 - Dshi_3234 0.22 +0.1
3,403,215 + Dshi_3234 0.23 -1.5
3,403,215 + Dshi_3234 0.23 +0.7
3,403,232 - Dshi_3234 0.24 -0.3
3,403,257 + Dshi_3234 0.26 +0.7
3,403,265 - Dshi_3234 0.27 -0.3
3,403,313 + Dshi_3234 0.30 +1.7
3,403,453 - Dshi_3234 0.40 -1.9
3,403,465 + Dshi_3234 0.41 -1.9
3,403,499 + Dshi_3234 0.43 -1.9
3,403,507 - Dshi_3234 0.44 +0.7
3,403,521 + Dshi_3234 0.45 -2.9
3,403,542 + Dshi_3234 0.46 -2.9
3,403,648 + Dshi_3234 0.54 +0.7
3,403,781 - Dshi_3234 0.64 -2.6

Or see this region's nucleotide sequence