Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3165 and Dshi_3166 overlap by 14 nucleotides Dshi_3166 and Dshi_3167 overlap by 4 nucleotides Dshi_3167 and Dshi_3168 are separated by 414 nucleotides
Dshi_3165: Dshi_3165 - periplasmic nitrate reductase, large subunit (RefSeq), at 3,328,696 to 3,331,191
_3165
Dshi_3166: Dshi_3166 - NapD family protein (RefSeq), at 3,331,178 to 3,331,480
_3166
Dshi_3167: Dshi_3167 - ferredoxin-type protein NapF (RefSeq), at 3,331,477 to 3,331,989
_3167
Dshi_3168: Dshi_3168 - ApbE family lipoprotein (RefSeq), at 3,332,404 to 3,333,345
_3168
Position (kb)
3331
3332 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3330.209 kb on - strand, within Dshi_3165 at 3330.209 kb on - strand, within Dshi_3165 at 3330.444 kb on + strand, within Dshi_3165 at 3330.449 kb on + strand, within Dshi_3165 at 3330.468 kb on + strand, within Dshi_3165 at 3330.512 kb on - strand, within Dshi_3165 at 3330.567 kb on - strand, within Dshi_3165 at 3330.577 kb on - strand, within Dshi_3165 at 3330.640 kb on + strand, within Dshi_3165 at 3330.644 kb on + strand, within Dshi_3165 at 3330.707 kb on - strand, within Dshi_3165 at 3330.717 kb on - strand, within Dshi_3165 at 3330.726 kb on - strand, within Dshi_3165 at 3330.730 kb on + strand, within Dshi_3165 at 3330.730 kb on + strand, within Dshi_3165 at 3330.834 kb on + strand, within Dshi_3165 at 3330.869 kb on + strand, within Dshi_3165 at 3330.953 kb on + strand at 3330.984 kb on - strand at 3331.184 kb on - strand at 3331.193 kb on + strand at 3331.193 kb on + strand at 3331.232 kb on - strand, within Dshi_3166 at 3331.449 kb on - strand, within Dshi_3166 at 3331.451 kb on + strand at 3331.482 kb on - strand at 3331.664 kb on + strand, within Dshi_3167 at 3331.695 kb on - strand, within Dshi_3167 at 3331.720 kb on - strand, within Dshi_3167 at 3331.758 kb on + strand, within Dshi_3167 at 3331.787 kb on - strand, within Dshi_3167 at 3331.798 kb on - strand, within Dshi_3167 at 3331.822 kb on - strand, within Dshi_3167 at 3331.897 kb on + strand, within Dshi_3167 at 3331.970 kb on + strand at 3331.985 kb on - strand at 3331.994 kb on + strand at 3332.026 kb on - strand at 3332.058 kb on - strand at 3332.064 kb on - strand at 3332.161 kb on + strand at 3332.169 kb on - strand at 3332.192 kb on - strand at 3332.222 kb on + strand at 3332.428 kb on - strand at 3332.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,330,209 - Dshi_3165 0.61 -1.0 3,330,209 - Dshi_3165 0.61 -0.5 3,330,444 + Dshi_3165 0.70 -0.9 3,330,449 + Dshi_3165 0.70 -0.2 3,330,468 + Dshi_3165 0.71 -4.3 3,330,512 - Dshi_3165 0.73 -2.2 3,330,567 - Dshi_3165 0.75 -0.3 3,330,577 - Dshi_3165 0.75 -2.6 3,330,640 + Dshi_3165 0.78 +0.2 3,330,644 + Dshi_3165 0.78 -1.2 3,330,707 - Dshi_3165 0.81 +0.4 3,330,717 - Dshi_3165 0.81 -0.7 3,330,726 - Dshi_3165 0.81 -2.6 3,330,730 + Dshi_3165 0.81 -0.2 3,330,730 + Dshi_3165 0.81 -0.9 3,330,834 + Dshi_3165 0.86 -1.2 3,330,869 + Dshi_3165 0.87 -0.2 3,330,953 + +2.4 3,330,984 - +0.4 3,331,184 - -0.2 3,331,193 + +0.8 3,331,193 + -0.2 3,331,232 - Dshi_3166 0.18 -2.0 3,331,449 - Dshi_3166 0.89 -0.7 3,331,451 + -1.0 3,331,482 - +2.2 3,331,664 + Dshi_3167 0.36 -1.5 3,331,695 - Dshi_3167 0.42 +0.1 3,331,720 - Dshi_3167 0.47 -2.9 3,331,758 + Dshi_3167 0.55 +0.8 3,331,787 - Dshi_3167 0.60 -2.8 3,331,798 - Dshi_3167 0.63 +1.2 3,331,822 - Dshi_3167 0.67 +0.0 3,331,897 + Dshi_3167 0.82 -0.0 3,331,970 + -0.2 3,331,985 - +0.8 3,331,994 + -2.5 3,332,026 - +0.6 3,332,058 - +3.0 3,332,064 - -0.3 3,332,161 + -0.6 3,332,169 - -1.0 3,332,192 - -0.1 3,332,222 + -1.6 3,332,428 - -0.6 3,332,464 + +2.4
Or see this region's nucleotide sequence