Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3161 and Dshi_3162 are separated by 27 nucleotides Dshi_3162 and Dshi_3163 are separated by 19 nucleotides Dshi_3163 and Dshi_3164 overlap by 4 nucleotides Dshi_3164 and Dshi_3165 are separated by 21 nucleotides
Dshi_3161: Dshi_3161 - NapC/NirT cytochrome c domain protein (RefSeq), at 3,325,753 to 3,326,466
_3161
Dshi_3162: Dshi_3162 - Nitrate reductase cytochrome c-type subunit (NapB) (RefSeq), at 3,326,494 to 3,326,937
_3162
Dshi_3163: Dshi_3163 - ferredoxin-type protein, NapH/MauN family (RefSeq), at 3,326,957 to 3,327,865
_3163
Dshi_3164: Dshi_3164 - MauM/NapG family ferredoxin-type protein (RefSeq), at 3,327,862 to 3,328,674
_3164
Dshi_3165: Dshi_3165 - periplasmic nitrate reductase, large subunit (RefSeq), at 3,328,696 to 3,331,191
_3165
Position (kb)
3326
3327
3328 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3326.065 kb on - strand, within Dshi_3161 at 3326.065 kb on - strand, within Dshi_3161 at 3326.198 kb on - strand, within Dshi_3161 at 3326.199 kb on - strand, within Dshi_3161 at 3326.425 kb on - strand at 3326.538 kb on + strand at 3326.554 kb on - strand, within Dshi_3162 at 3326.573 kb on + strand, within Dshi_3162 at 3326.578 kb on + strand, within Dshi_3162 at 3326.636 kb on + strand, within Dshi_3162 at 3326.644 kb on - strand, within Dshi_3162 at 3326.664 kb on + strand, within Dshi_3162 at 3326.664 kb on + strand, within Dshi_3162 at 3326.735 kb on - strand, within Dshi_3162 at 3326.735 kb on - strand, within Dshi_3162 at 3326.913 kb on + strand at 3326.935 kb on + strand at 3327.111 kb on - strand, within Dshi_3163 at 3327.148 kb on + strand, within Dshi_3163 at 3327.212 kb on - strand, within Dshi_3163 at 3327.300 kb on - strand, within Dshi_3163 at 3327.396 kb on - strand, within Dshi_3163 at 3327.396 kb on - strand, within Dshi_3163 at 3327.474 kb on + strand, within Dshi_3163 at 3327.474 kb on + strand, within Dshi_3163 at 3327.474 kb on + strand, within Dshi_3163 at 3327.557 kb on - strand, within Dshi_3163 at 3327.681 kb on + strand, within Dshi_3163 at 3327.867 kb on + strand at 3327.902 kb on - strand at 3328.075 kb on + strand, within Dshi_3164 at 3328.075 kb on + strand, within Dshi_3164 at 3328.119 kb on + strand, within Dshi_3164 at 3328.124 kb on + strand, within Dshi_3164 at 3328.160 kb on - strand, within Dshi_3164 at 3328.179 kb on + strand, within Dshi_3164 at 3328.187 kb on - strand, within Dshi_3164 at 3328.208 kb on + strand, within Dshi_3164 at 3328.288 kb on - strand, within Dshi_3164 at 3328.378 kb on - strand, within Dshi_3164 at 3328.443 kb on + strand, within Dshi_3164 at 3328.694 kb on + strand at 3328.702 kb on - strand at 3328.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,326,065 - Dshi_3161 0.44 -2.3 3,326,065 - Dshi_3161 0.44 -2.5 3,326,198 - Dshi_3161 0.62 -1.3 3,326,199 - Dshi_3161 0.62 -2.7 3,326,425 - -3.1 3,326,538 + +0.8 3,326,554 - Dshi_3162 0.14 -0.5 3,326,573 + Dshi_3162 0.18 -0.6 3,326,578 + Dshi_3162 0.19 +0.8 3,326,636 + Dshi_3162 0.32 -1.5 3,326,644 - Dshi_3162 0.34 +0.8 3,326,664 + Dshi_3162 0.38 -1.5 3,326,664 + Dshi_3162 0.38 -1.4 3,326,735 - Dshi_3162 0.54 -1.2 3,326,735 - Dshi_3162 0.54 -2.5 3,326,913 + -0.2 3,326,935 + -1.1 3,327,111 - Dshi_3163 0.17 +0.2 3,327,148 + Dshi_3163 0.21 -0.7 3,327,212 - Dshi_3163 0.28 -1.5 3,327,300 - Dshi_3163 0.38 -1.2 3,327,396 - Dshi_3163 0.48 -0.2 3,327,396 - Dshi_3163 0.48 -0.4 3,327,474 + Dshi_3163 0.57 -0.6 3,327,474 + Dshi_3163 0.57 -0.7 3,327,474 + Dshi_3163 0.57 -2.3 3,327,557 - Dshi_3163 0.66 -2.2 3,327,681 + Dshi_3163 0.80 -2.5 3,327,867 + +0.2 3,327,902 - +0.8 3,328,075 + Dshi_3164 0.26 -0.9 3,328,075 + Dshi_3164 0.26 -2.2 3,328,119 + Dshi_3164 0.32 -2.2 3,328,124 + Dshi_3164 0.32 -2.5 3,328,160 - Dshi_3164 0.37 -0.3 3,328,179 + Dshi_3164 0.39 -1.2 3,328,187 - Dshi_3164 0.40 +0.8 3,328,208 + Dshi_3164 0.43 +0.8 3,328,288 - Dshi_3164 0.52 -3.0 3,328,378 - Dshi_3164 0.63 +2.4 3,328,443 + Dshi_3164 0.71 +0.0 3,328,694 + +0.2 3,328,702 - -1.7 3,328,821 - -0.4
Or see this region's nucleotide sequence