Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3158
Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Fusidic 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,322,663 | + | Dshi_3157 | 0.20 | +3.4 | |
3,322,985 | + | Dshi_3157 | 0.52 | -2.9 | |
3,323,052 | - | Dshi_3157 | 0.59 | -0.2 | |
3,323,207 | - | Dshi_3157 | 0.74 | -0.2 | |
3,323,317 | - | Dshi_3157 | 0.85 | +0.8 | |
3,323,349 | + | Dshi_3157 | 0.88 | +0.8 | |
3,323,349 | + | Dshi_3157 | 0.88 | -3.1 | |
3,323,357 | - | Dshi_3157 | 0.89 | +1.1 | |
3,323,632 | - | Dshi_3158 | 0.32 | -1.2 | |
3,323,857 | + | Dshi_3158 | 0.78 | +2.4 | |
3,323,870 | - | Dshi_3158 | 0.80 | +0.1 | |
3,323,892 | - | Dshi_3158 | 0.85 | -1.7 | |
3,323,895 | + | Dshi_3158 | 0.85 | -1.2 | |
3,323,974 | + | +1.6 | |||
3,324,022 | + | +1.3 | |||
3,324,033 | + | -1.6 | |||
3,324,049 | - | -2.6 | |||
3,324,193 | - | Dshi_3159 | 0.17 | +0.8 | |
3,324,212 | - | Dshi_3159 | 0.19 | +2.4 | |
3,324,219 | + | Dshi_3159 | 0.19 | -0.6 | |
3,324,420 | + | Dshi_3159 | 0.35 | +0.0 | |
3,324,528 | - | Dshi_3159 | 0.43 | -2.2 | |
3,324,668 | + | -1.2 | |||
3,324,676 | - | Dshi_3159 | 0.55 | -0.2 | |
3,324,760 | - | Dshi_3159 | 0.61 | -1.5 | |
3,324,955 | - | Dshi_3159 | 0.76 | -1.6 |
Or see this region's nucleotide sequence