Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2829 and Dshi_2830 are separated by 76 nucleotides Dshi_2830 and Dshi_2831 are separated by 24 nucleotides Dshi_2831 and Dshi_2832 are separated by 110 nucleotides
Dshi_2829: Dshi_2829 - glutathione synthetase (RefSeq), at 2,985,279 to 2,986,226
_2829
Dshi_2830: Dshi_2830 - protein of unknown function UPF0102 (RefSeq), at 2,986,303 to 2,986,707
_2830
Dshi_2831: Dshi_2831 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 2,986,732 to 2,987,586
_2831
Dshi_2832: Dshi_2832 - extracellular ligand-binding receptor (RefSeq), at 2,987,697 to 2,988,881
_2832
Position (kb)
2986
2987 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2985.315 kb on + strand at 2986.144 kb on - strand at 2986.208 kb on - strand at 2986.380 kb on - strand, within Dshi_2830 at 2986.478 kb on + strand, within Dshi_2830 at 2986.653 kb on + strand, within Dshi_2830 at 2986.680 kb on + strand at 2986.730 kb on - strand at 2986.739 kb on - strand at 2986.781 kb on - strand at 2986.818 kb on + strand, within Dshi_2831 at 2986.826 kb on - strand, within Dshi_2831 at 2986.858 kb on + strand, within Dshi_2831 at 2986.977 kb on - strand, within Dshi_2831 at 2987.211 kb on - strand, within Dshi_2831 at 2987.211 kb on - strand, within Dshi_2831 at 2987.257 kb on + strand, within Dshi_2831 at 2987.364 kb on - strand, within Dshi_2831 at 2987.406 kb on + strand, within Dshi_2831 at 2987.502 kb on - strand at 2987.525 kb on - strand at 2987.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,985,315 + -1.4 2,986,144 - -1.9 2,986,208 - -2.0 2,986,380 - Dshi_2830 0.19 -0.5 2,986,478 + Dshi_2830 0.43 -2.0 2,986,653 + Dshi_2830 0.86 -3.4 2,986,680 + +1.0 2,986,730 - -1.0 2,986,739 - -0.0 2,986,781 - -1.4 2,986,818 + Dshi_2831 0.10 +1.5 2,986,826 - Dshi_2831 0.11 +0.5 2,986,858 + Dshi_2831 0.15 -1.0 2,986,977 - Dshi_2831 0.29 +1.0 2,987,211 - Dshi_2831 0.56 +0.4 2,987,211 - Dshi_2831 0.56 +3.8 2,987,257 + Dshi_2831 0.61 -0.0 2,987,364 - Dshi_2831 0.74 +2.0 2,987,406 + Dshi_2831 0.79 -1.7 2,987,502 - -0.0 2,987,525 - +1.0 2,987,575 + +1.0
Or see this region's nucleotide sequence