Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2802 and Dshi_2803 are separated by 58 nucleotides Dshi_2803 and Dshi_2804 are separated by 134 nucleotides
Dshi_2802: Dshi_2802 - oxidoreductase molybdopterin binding (RefSeq), at 2,960,490 to 2,961,767
_2802
Dshi_2803: Dshi_2803 - 5'-Nucleotidase domain protein (RefSeq), at 2,961,826 to 2,963,520
_2803
Dshi_2804: Dshi_2804 - diheme cytochrome c SoxA (RefSeq), at 2,963,655 to 2,964,509
_2804
Position (kb)
2961
2962
2963
2964 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2960.883 kb on - strand, within Dshi_2802 at 2960.969 kb on + strand, within Dshi_2802 at 2961.020 kb on - strand, within Dshi_2802 at 2961.072 kb on - strand, within Dshi_2802 at 2961.112 kb on + strand, within Dshi_2802 at 2961.263 kb on + strand, within Dshi_2802 at 2961.271 kb on + strand, within Dshi_2802 at 2961.271 kb on + strand, within Dshi_2802 at 2961.279 kb on - strand, within Dshi_2802 at 2961.279 kb on - strand, within Dshi_2802 at 2961.279 kb on - strand, within Dshi_2802 at 2961.364 kb on + strand, within Dshi_2802 at 2961.372 kb on - strand, within Dshi_2802 at 2961.372 kb on - strand, within Dshi_2802 at 2961.426 kb on + strand, within Dshi_2802 at 2961.476 kb on - strand, within Dshi_2802 at 2961.476 kb on - strand, within Dshi_2802 at 2961.636 kb on + strand, within Dshi_2802 at 2961.679 kb on + strand at 2961.682 kb on - strand at 2961.860 kb on - strand at 2961.869 kb on + strand at 2961.918 kb on - strand at 2961.964 kb on + strand at 2961.996 kb on + strand, within Dshi_2803 at 2962.025 kb on + strand, within Dshi_2803 at 2962.253 kb on - strand, within Dshi_2803 at 2962.273 kb on - strand, within Dshi_2803 at 2962.362 kb on + strand, within Dshi_2803 at 2962.365 kb on + strand, within Dshi_2803 at 2962.375 kb on + strand, within Dshi_2803 at 2962.500 kb on - strand, within Dshi_2803 at 2962.551 kb on + strand, within Dshi_2803 at 2962.660 kb on - strand, within Dshi_2803 at 2962.803 kb on + strand, within Dshi_2803 at 2963.050 kb on - strand, within Dshi_2803 at 2963.075 kb on - strand, within Dshi_2803 at 2963.131 kb on - strand, within Dshi_2803 at 2963.170 kb on + strand, within Dshi_2803 at 2963.178 kb on - strand, within Dshi_2803 at 2963.200 kb on + strand, within Dshi_2803 at 2963.234 kb on + strand, within Dshi_2803 at 2963.234 kb on + strand, within Dshi_2803 at 2963.341 kb on - strand, within Dshi_2803 at 2963.341 kb on - strand, within Dshi_2803 at 2963.341 kb on - strand, within Dshi_2803 at 2963.370 kb on + strand at 2963.410 kb on - strand at 2963.422 kb on - strand at 2963.444 kb on + strand at 2963.545 kb on + strand at 2963.559 kb on - strand at 2963.689 kb on + strand at 2963.793 kb on + strand, within Dshi_2804 at 2963.796 kb on - strand, within Dshi_2804 at 2963.850 kb on + strand, within Dshi_2804 at 2963.884 kb on + strand, within Dshi_2804 at 2963.958 kb on - strand, within Dshi_2804 at 2964.017 kb on + strand, within Dshi_2804 at 2964.058 kb on - strand, within Dshi_2804 at 2964.060 kb on + strand, within Dshi_2804 at 2964.072 kb on + strand, within Dshi_2804 at 2964.208 kb on + strand, within Dshi_2804 at 2964.236 kb on - strand, within Dshi_2804 at 2964.240 kb on + strand, within Dshi_2804 at 2964.320 kb on - strand, within Dshi_2804 at 2964.330 kb on + strand, within Dshi_2804 at 2964.366 kb on - strand, within Dshi_2804 at 2964.429 kb on + strand at 2964.437 kb on - strand at 2964.458 kb on - strand at 2964.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,960,883 - Dshi_2802 0.31 -2.7 2,960,969 + Dshi_2802 0.37 +0.9 2,961,020 - Dshi_2802 0.41 +0.9 2,961,072 - Dshi_2802 0.46 -3.7 2,961,112 + Dshi_2802 0.49 -1.2 2,961,263 + Dshi_2802 0.60 -1.1 2,961,271 + Dshi_2802 0.61 -3.3 2,961,271 + Dshi_2802 0.61 -0.2 2,961,279 - Dshi_2802 0.62 +3.5 2,961,279 - Dshi_2802 0.62 -2.1 2,961,279 - Dshi_2802 0.62 -1.6 2,961,364 + Dshi_2802 0.68 -1.4 2,961,372 - Dshi_2802 0.69 +1.2 2,961,372 - Dshi_2802 0.69 -0.8 2,961,426 + Dshi_2802 0.73 +0.1 2,961,476 - Dshi_2802 0.77 -0.2 2,961,476 - Dshi_2802 0.77 -0.9 2,961,636 + Dshi_2802 0.90 -0.7 2,961,679 + +0.5 2,961,682 - -3.6 2,961,860 - +1.5 2,961,869 + -1.4 2,961,918 - -1.5 2,961,964 + +1.6 2,961,996 + Dshi_2803 0.10 -0.7 2,962,025 + Dshi_2803 0.12 -0.8 2,962,253 - Dshi_2803 0.25 -0.2 2,962,273 - Dshi_2803 0.26 +3.7 2,962,362 + Dshi_2803 0.32 -2.5 2,962,365 + Dshi_2803 0.32 -2.3 2,962,375 + Dshi_2803 0.32 -0.1 2,962,500 - Dshi_2803 0.40 -0.5 2,962,551 + Dshi_2803 0.43 -1.7 2,962,660 - Dshi_2803 0.49 -0.8 2,962,803 + Dshi_2803 0.58 -2.1 2,963,050 - Dshi_2803 0.72 +0.5 2,963,075 - Dshi_2803 0.74 +1.6 2,963,131 - Dshi_2803 0.77 +0.3 2,963,170 + Dshi_2803 0.79 -0.9 2,963,178 - Dshi_2803 0.80 +1.2 2,963,200 + Dshi_2803 0.81 -2.4 2,963,234 + Dshi_2803 0.83 -3.5 2,963,234 + Dshi_2803 0.83 -1.8 2,963,341 - Dshi_2803 0.89 -0.8 2,963,341 - Dshi_2803 0.89 +1.3 2,963,341 - Dshi_2803 0.89 +0.5 2,963,370 + -0.0 2,963,410 - -1.9 2,963,422 - +0.9 2,963,444 + -0.1 2,963,545 + -0.7 2,963,559 - -0.7 2,963,689 + -1.0 2,963,793 + Dshi_2804 0.16 +0.0 2,963,796 - Dshi_2804 0.16 +3.9 2,963,850 + Dshi_2804 0.23 +2.9 2,963,884 + Dshi_2804 0.27 -2.1 2,963,958 - Dshi_2804 0.35 -1.1 2,964,017 + Dshi_2804 0.42 -0.3 2,964,058 - Dshi_2804 0.47 -0.5 2,964,060 + Dshi_2804 0.47 +0.1 2,964,072 + Dshi_2804 0.49 +0.8 2,964,208 + Dshi_2804 0.65 -3.5 2,964,236 - Dshi_2804 0.68 -0.4 2,964,240 + Dshi_2804 0.68 -2.1 2,964,320 - Dshi_2804 0.78 -4.4 2,964,330 + Dshi_2804 0.79 +1.5 2,964,366 - Dshi_2804 0.83 +0.9 2,964,429 + +0.2 2,964,437 - +1.1 2,964,458 - +1.6 2,964,487 + -0.2
Or see this region's nucleotide sequence