Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2779

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2777 and Dshi_2778 are separated by 125 nucleotidesDshi_2778 and Dshi_2779 are separated by 179 nucleotidesDshi_2779 and Dshi_2780 are separated by 69 nucleotidesDshi_2780 and Dshi_2781 are separated by 326 nucleotides Dshi_2777: Dshi_2777 - transcriptional regulator, LysR family (RefSeq), at 2,939,244 to 2,940,098 _2777 Dshi_2778: Dshi_2778 - hypothetical protein (RefSeq), at 2,940,224 to 2,940,442 _2778 Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344 _2779 Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887 _2780 Dshi_2781: Dshi_2781 - ribosomal protein L33 (RefSeq), at 2,942,214 to 2,942,381 _2781 Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2939.837 kb on - strand, within Dshi_2777at 2939.982 kb on - strand, within Dshi_2777at 2940.175 kb on - strandat 2940.244 kb on - strandat 2940.310 kb on - strand, within Dshi_2778at 2940.394 kb on - strand, within Dshi_2778at 2940.419 kb on - strand, within Dshi_2778at 2940.520 kb on + strandat 2940.533 kb on + strandat 2940.803 kb on - strand, within Dshi_2779at 2941.075 kb on + strand, within Dshi_2779at 2941.174 kb on + strand, within Dshi_2779at 2941.453 kb on + strandat 2941.485 kb on - strand, within Dshi_2780at 2941.871 kb on + strandat 2941.920 kb on - strandat 2941.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,939,837 - Dshi_2777 0.69 +1.6
2,939,982 - Dshi_2777 0.86 +0.6
2,940,175 - +1.1
2,940,244 - +0.9
2,940,310 - Dshi_2778 0.39 -0.3
2,940,394 - Dshi_2778 0.78 -1.5
2,940,419 - Dshi_2778 0.89 -1.7
2,940,520 + +0.9
2,940,533 + +2.5
2,940,803 - Dshi_2779 0.25 -3.7
2,941,075 + Dshi_2779 0.63 -2.1
2,941,174 + Dshi_2779 0.76 -1.1
2,941,453 + +1.3
2,941,485 - Dshi_2780 0.15 -0.3
2,941,871 + +0.9
2,941,920 - +1.2
2,941,956 + +2.9

Or see this region's nucleotide sequence