Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2724

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2722 and Dshi_2723 are separated by 213 nucleotidesDshi_2723 and Dshi_2724 overlap by 4 nucleotidesDshi_2724 and Dshi_2725 are separated by 23 nucleotides Dshi_2722: Dshi_2722 - protein of unknown function DUF427 (RefSeq), at 2,884,592 to 2,884,933 _2722 Dshi_2723: Dshi_2723 - Intracellular septation protein A (RefSeq), at 2,885,147 to 2,885,776 _2723 Dshi_2724: Dshi_2724 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,885,773 to 2,886,675 _2724 Dshi_2725: Dshi_2725 - signal recognition particle-docking protein FtsY (RefSeq), at 2,886,699 to 2,888,198 _2725 Position (kb) 2885 2886 2887Strain fitness (log2 ratio) -2 -1 0 1 2at 2884.778 kb on - strand, within Dshi_2722at 2885.017 kb on - strandat 2885.818 kb on + strandat 2885.826 kb on - strandat 2886.005 kb on - strand, within Dshi_2724at 2886.081 kb on - strand, within Dshi_2724at 2886.171 kb on - strand, within Dshi_2724at 2886.213 kb on - strand, within Dshi_2724at 2886.283 kb on - strand, within Dshi_2724at 2886.340 kb on - strand, within Dshi_2724at 2886.373 kb on - strand, within Dshi_2724at 2886.397 kb on + strand, within Dshi_2724at 2886.476 kb on - strand, within Dshi_2724at 2886.517 kb on - strand, within Dshi_2724at 2886.687 kb on + strandat 2886.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,884,778 - Dshi_2722 0.54 +1.9
2,885,017 - -1.5
2,885,818 + -1.5
2,885,826 - -2.3
2,886,005 - Dshi_2724 0.26 -0.3
2,886,081 - Dshi_2724 0.34 +2.4
2,886,171 - Dshi_2724 0.44 -0.7
2,886,213 - Dshi_2724 0.49 -1.7
2,886,283 - Dshi_2724 0.56 -1.4
2,886,340 - Dshi_2724 0.63 -2.1
2,886,373 - Dshi_2724 0.66 -2.1
2,886,397 + Dshi_2724 0.69 +1.4
2,886,476 - Dshi_2724 0.78 -1.7
2,886,517 - Dshi_2724 0.82 -2.3
2,886,687 + -0.7
2,886,715 - -0.1

Or see this region's nucleotide sequence