Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2699

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2697 and Dshi_2698 overlap by 4 nucleotidesDshi_2698 and Dshi_2699 are separated by 1 nucleotidesDshi_2699 and Dshi_2700 are separated by 476 nucleotides Dshi_2697: Dshi_2697 - inner-membrane translocator (RefSeq), at 2,857,981 to 2,859,084 _2697 Dshi_2698: Dshi_2698 - ABC transporter related (RefSeq), at 2,859,081 to 2,859,818 _2698 Dshi_2699: Dshi_2699 - ABC transporter related (RefSeq), at 2,859,820 to 2,860,515 _2699 Dshi_2700: Dshi_2700 - haloacid dehalogenase, type II (RefSeq), at 2,860,992 to 2,861,681 _2700 Position (kb) 2859 2860 2861Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2858.925 kb on - strand, within Dshi_2697at 2858.925 kb on - strand, within Dshi_2697at 2858.943 kb on - strand, within Dshi_2697at 2859.056 kb on + strandat 2859.096 kb on + strandat 2859.204 kb on + strand, within Dshi_2698at 2859.277 kb on + strand, within Dshi_2698at 2859.418 kb on - strand, within Dshi_2698at 2859.470 kb on + strand, within Dshi_2698at 2859.684 kb on + strand, within Dshi_2698at 2859.786 kb on - strandat 2859.854 kb on - strandat 2859.867 kb on - strandat 2859.903 kb on + strand, within Dshi_2699at 2859.911 kb on - strand, within Dshi_2699at 2860.162 kb on + strand, within Dshi_2699at 2860.311 kb on - strand, within Dshi_2699at 2860.406 kb on + strand, within Dshi_2699at 2860.489 kb on - strandat 2860.570 kb on + strandat 2860.678 kb on + strandat 2860.835 kb on + strandat 2860.901 kb on - strandat 2860.934 kb on + strandat 2860.990 kb on - strandat 2861.275 kb on + strand, within Dshi_2700at 2861.290 kb on - strand, within Dshi_2700at 2861.293 kb on + strand, within Dshi_2700at 2861.362 kb on - strand, within Dshi_2700at 2861.422 kb on - strand, within Dshi_2700at 2861.469 kb on + strand, within Dshi_2700

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,858,925 - Dshi_2697 0.86 -0.9
2,858,925 - Dshi_2697 0.86 +0.8
2,858,943 - Dshi_2697 0.87 -0.3
2,859,056 + -1.6
2,859,096 + -1.3
2,859,204 + Dshi_2698 0.17 -2.2
2,859,277 + Dshi_2698 0.27 -2.0
2,859,418 - Dshi_2698 0.46 +0.4
2,859,470 + Dshi_2698 0.53 -3.2
2,859,684 + Dshi_2698 0.82 -2.6
2,859,786 - +0.8
2,859,854 - -2.9
2,859,867 - -0.2
2,859,903 + Dshi_2699 0.12 +2.4
2,859,911 - Dshi_2699 0.13 -1.0
2,860,162 + Dshi_2699 0.49 -0.8
2,860,311 - Dshi_2699 0.71 -0.7
2,860,406 + Dshi_2699 0.84 -0.5
2,860,489 - +1.8
2,860,570 + +1.0
2,860,678 + +0.2
2,860,835 + -1.2
2,860,901 - +0.8
2,860,934 + +0.8
2,860,990 - +0.8
2,861,275 + Dshi_2700 0.41 +0.8
2,861,290 - Dshi_2700 0.43 -0.7
2,861,293 + Dshi_2700 0.44 +0.8
2,861,362 - Dshi_2700 0.54 -0.4
2,861,422 - Dshi_2700 0.62 -1.2
2,861,469 + Dshi_2700 0.69 -1.4

Or see this region's nucleotide sequence