Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2560

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2559 and Dshi_2560 are separated by 5 nucleotidesDshi_2560 and Dshi_2561 are separated by 3 nucleotidesDshi_2561 and Dshi_2562 are separated by 183 nucleotides Dshi_2559: Dshi_2559 - AAA ATPase central domain protein (RefSeq), at 2,723,112 to 2,724,446 _2559 Dshi_2560: Dshi_2560 - hypothetical protein (RefSeq), at 2,724,452 to 2,725,531 _2560 Dshi_2561: Dshi_2561 - hypothetical protein (RefSeq), at 2,725,535 to 2,726,218 _2561 Dshi_2562: Dshi_2562 - hypothetical protein (RefSeq), at 2,726,402 to 2,727,220 _2562 Position (kb) 2724 2725 2726Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2723.460 kb on + strand, within Dshi_2559at 2723.468 kb on - strand, within Dshi_2559at 2723.478 kb on - strand, within Dshi_2559at 2723.708 kb on - strand, within Dshi_2559at 2723.735 kb on - strand, within Dshi_2559at 2723.744 kb on + strand, within Dshi_2559at 2723.779 kb on - strand, within Dshi_2559at 2723.931 kb on + strand, within Dshi_2559at 2723.982 kb on - strand, within Dshi_2559at 2724.095 kb on - strand, within Dshi_2559at 2724.114 kb on - strand, within Dshi_2559at 2724.163 kb on - strand, within Dshi_2559at 2724.163 kb on - strand, within Dshi_2559at 2724.440 kb on + strandat 2724.482 kb on + strandat 2724.495 kb on - strandat 2724.673 kb on - strand, within Dshi_2560at 2724.759 kb on + strand, within Dshi_2560at 2724.767 kb on - strand, within Dshi_2560at 2724.790 kb on - strand, within Dshi_2560at 2724.863 kb on + strand, within Dshi_2560at 2724.866 kb on - strand, within Dshi_2560at 2724.871 kb on - strand, within Dshi_2560at 2724.908 kb on + strand, within Dshi_2560at 2724.918 kb on - strand, within Dshi_2560at 2724.928 kb on - strand, within Dshi_2560at 2725.001 kb on + strand, within Dshi_2560at 2725.001 kb on + strand, within Dshi_2560at 2725.032 kb on - strand, within Dshi_2560at 2725.047 kb on - strand, within Dshi_2560at 2725.096 kb on + strand, within Dshi_2560at 2725.140 kb on - strand, within Dshi_2560at 2725.175 kb on - strand, within Dshi_2560at 2725.221 kb on - strand, within Dshi_2560at 2725.270 kb on + strand, within Dshi_2560at 2725.319 kb on - strand, within Dshi_2560at 2725.451 kb on + strandat 2725.591 kb on + strandat 2725.596 kb on + strandat 2725.604 kb on - strand, within Dshi_2561at 2725.604 kb on - strand, within Dshi_2561at 2725.604 kb on - strand, within Dshi_2561at 2725.673 kb on + strand, within Dshi_2561at 2725.673 kb on + strand, within Dshi_2561at 2725.681 kb on - strand, within Dshi_2561at 2725.691 kb on - strand, within Dshi_2561at 2725.825 kb on - strand, within Dshi_2561at 2725.859 kb on - strand, within Dshi_2561at 2725.927 kb on + strand, within Dshi_2561at 2725.927 kb on + strand, within Dshi_2561at 2725.972 kb on + strand, within Dshi_2561at 2726.019 kb on - strand, within Dshi_2561at 2726.130 kb on + strand, within Dshi_2561at 2726.302 kb on - strandat 2726.377 kb on - strandat 2726.400 kb on + strandat 2726.408 kb on - strandat 2726.471 kb on - strandat 2726.514 kb on - strand, within Dshi_2562at 2726.516 kb on + strand, within Dshi_2562

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
2,723,460 + Dshi_2559 0.26 -0.2
2,723,468 - Dshi_2559 0.27 -1.6
2,723,478 - Dshi_2559 0.27 +2.1
2,723,708 - Dshi_2559 0.45 +0.6
2,723,735 - Dshi_2559 0.47 +2.9
2,723,744 + Dshi_2559 0.47 +1.3
2,723,779 - Dshi_2559 0.50 +1.4
2,723,931 + Dshi_2559 0.61 -1.4
2,723,982 - Dshi_2559 0.65 -1.0
2,724,095 - Dshi_2559 0.74 -1.0
2,724,114 - Dshi_2559 0.75 +0.6
2,724,163 - Dshi_2559 0.79 +1.4
2,724,163 - Dshi_2559 0.79 -0.0
2,724,440 + +0.3
2,724,482 + -0.8
2,724,495 - -1.7
2,724,673 - Dshi_2560 0.20 +1.1
2,724,759 + Dshi_2560 0.28 -3.4
2,724,767 - Dshi_2560 0.29 -1.0
2,724,790 - Dshi_2560 0.31 +3.1
2,724,863 + Dshi_2560 0.38 +0.6
2,724,866 - Dshi_2560 0.38 -0.1
2,724,871 - Dshi_2560 0.39 +0.6
2,724,908 + Dshi_2560 0.42 +2.6
2,724,918 - Dshi_2560 0.43 -1.2
2,724,928 - Dshi_2560 0.44 -1.8
2,725,001 + Dshi_2560 0.51 -2.5
2,725,001 + Dshi_2560 0.51 +1.4
2,725,032 - Dshi_2560 0.54 +1.1
2,725,047 - Dshi_2560 0.55 -0.2
2,725,096 + Dshi_2560 0.60 -1.8
2,725,140 - Dshi_2560 0.64 -1.2
2,725,175 - Dshi_2560 0.67 -2.9
2,725,221 - Dshi_2560 0.71 -1.1
2,725,270 + Dshi_2560 0.76 -2.6
2,725,319 - Dshi_2560 0.80 -1.1
2,725,451 + -1.0
2,725,591 + -2.0
2,725,596 + +1.6
2,725,604 - Dshi_2561 0.10 -1.8
2,725,604 - Dshi_2561 0.10 -0.0
2,725,604 - Dshi_2561 0.10 -0.9
2,725,673 + Dshi_2561 0.20 -3.3
2,725,673 + Dshi_2561 0.20 +0.6
2,725,681 - Dshi_2561 0.21 -1.4
2,725,691 - Dshi_2561 0.23 -1.2
2,725,825 - Dshi_2561 0.42 -2.6
2,725,859 - Dshi_2561 0.47 -0.5
2,725,927 + Dshi_2561 0.57 +1.0
2,725,927 + Dshi_2561 0.57 -1.1
2,725,972 + Dshi_2561 0.64 -0.4
2,726,019 - Dshi_2561 0.71 -1.6
2,726,130 + Dshi_2561 0.87 -0.2
2,726,302 - +3.1
2,726,377 - -1.8
2,726,400 + +0.1
2,726,408 - -0.3
2,726,471 - +0.2
2,726,514 - Dshi_2562 0.14 -1.4
2,726,516 + Dshi_2562 0.14 -0.6

Or see this region's nucleotide sequence