Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2546 and Dshi_2547 are separated by 91 nucleotides Dshi_2547 and Dshi_2548 are separated by 16 nucleotides
Dshi_2546: Dshi_2546 - Malate/L-lactate dehydrogenase (RefSeq), at 2,702,195 to 2,703,250
_2546
Dshi_2547: Dshi_2547 - hypothetical protein (RefSeq), at 2,703,342 to 2,703,722
_2547
Dshi_2548: Dshi_2548 - hypothetical protein (RefSeq), at 2,703,739 to 2,707,950
_2548
Position (kb)
2703
2704 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2702.374 kb on + strand, within Dshi_2546 at 2702.398 kb on + strand, within Dshi_2546 at 2702.569 kb on - strand, within Dshi_2546 at 2702.578 kb on + strand, within Dshi_2546 at 2702.592 kb on - strand, within Dshi_2546 at 2702.758 kb on + strand, within Dshi_2546 at 2702.766 kb on - strand, within Dshi_2546 at 2702.864 kb on - strand, within Dshi_2546 at 2702.874 kb on - strand, within Dshi_2546 at 2702.886 kb on - strand, within Dshi_2546 at 2703.041 kb on - strand, within Dshi_2546 at 2703.046 kb on - strand, within Dshi_2546 at 2703.090 kb on + strand, within Dshi_2546 at 2703.106 kb on + strand, within Dshi_2546 at 2703.106 kb on + strand, within Dshi_2546 at 2703.147 kb on - strand at 2703.177 kb on + strand at 2703.249 kb on + strand at 2703.332 kb on - strand at 2703.350 kb on - strand at 2703.373 kb on + strand at 2703.377 kb on + strand at 2703.385 kb on - strand, within Dshi_2547 at 2703.415 kb on - strand, within Dshi_2547 at 2703.429 kb on - strand, within Dshi_2547 at 2703.434 kb on - strand, within Dshi_2547 at 2703.436 kb on + strand, within Dshi_2547 at 2703.436 kb on + strand, within Dshi_2547 at 2703.451 kb on + strand, within Dshi_2547 at 2703.451 kb on + strand, within Dshi_2547 at 2703.454 kb on - strand, within Dshi_2547 at 2703.459 kb on - strand, within Dshi_2547 at 2703.479 kb on - strand, within Dshi_2547 at 2703.578 kb on + strand, within Dshi_2547 at 2703.586 kb on - strand, within Dshi_2547 at 2703.586 kb on - strand, within Dshi_2547 at 2703.601 kb on - strand, within Dshi_2547 at 2703.663 kb on + strand, within Dshi_2547 at 2703.671 kb on - strand, within Dshi_2547 at 2703.731 kb on - strand at 2703.742 kb on + strand at 2703.742 kb on + strand at 2703.750 kb on - strand at 2703.804 kb on + strand at 2703.817 kb on - strand at 2703.844 kb on + strand at 2703.912 kb on - strand at 2703.926 kb on + strand at 2703.926 kb on + strand at 2703.926 kb on + strand at 2703.934 kb on - strand at 2703.934 kb on - strand at 2703.934 kb on - strand at 2703.950 kb on + strand at 2703.992 kb on + strand at 2704.122 kb on - strand at 2704.139 kb on - strand at 2704.147 kb on - strand at 2704.147 kb on - strand at 2704.163 kb on + strand, within Dshi_2548 at 2704.215 kb on - strand, within Dshi_2548 at 2704.295 kb on + strand, within Dshi_2548 at 2704.301 kb on + strand, within Dshi_2548 at 2704.302 kb on + strand, within Dshi_2548 at 2704.302 kb on + strand, within Dshi_2548 at 2704.303 kb on - strand, within Dshi_2548 at 2704.395 kb on - strand, within Dshi_2548 at 2704.442 kb on - strand, within Dshi_2548 at 2704.452 kb on + strand, within Dshi_2548 at 2704.452 kb on + strand, within Dshi_2548 at 2704.452 kb on + strand, within Dshi_2548 at 2704.452 kb on + strand, within Dshi_2548 at 2704.460 kb on - strand, within Dshi_2548 at 2704.460 kb on - strand, within Dshi_2548 at 2704.460 kb on - strand, within Dshi_2548 at 2704.465 kb on + strand, within Dshi_2548 at 2704.500 kb on - strand, within Dshi_2548 at 2704.511 kb on + strand, within Dshi_2548 at 2704.572 kb on + strand, within Dshi_2548 at 2704.720 kb on - strand, within Dshi_2548
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,702,374 + Dshi_2546 0.17 +0.2 2,702,398 + Dshi_2546 0.19 -0.8 2,702,569 - Dshi_2546 0.35 +0.3 2,702,578 + Dshi_2546 0.36 -0.5 2,702,592 - Dshi_2546 0.38 +1.6 2,702,758 + Dshi_2546 0.53 -1.0 2,702,766 - Dshi_2546 0.54 +1.0 2,702,864 - Dshi_2546 0.63 +0.1 2,702,874 - Dshi_2546 0.64 +1.2 2,702,886 - Dshi_2546 0.65 -0.6 2,703,041 - Dshi_2546 0.80 -0.5 2,703,046 - Dshi_2546 0.81 -0.9 2,703,090 + Dshi_2546 0.85 -0.9 2,703,106 + Dshi_2546 0.86 +1.0 2,703,106 + Dshi_2546 0.86 -0.3 2,703,147 - -0.4 2,703,177 + -0.1 2,703,249 + +0.8 2,703,332 - +2.9 2,703,350 - -0.4 2,703,373 + +0.9 2,703,377 + -0.9 2,703,385 - Dshi_2547 0.11 -1.4 2,703,415 - Dshi_2547 0.19 +0.5 2,703,429 - Dshi_2547 0.23 +0.0 2,703,434 - Dshi_2547 0.24 +2.7 2,703,436 + Dshi_2547 0.25 +1.5 2,703,436 + Dshi_2547 0.25 -1.0 2,703,451 + Dshi_2547 0.29 +1.3 2,703,451 + Dshi_2547 0.29 +0.6 2,703,454 - Dshi_2547 0.29 -0.6 2,703,459 - Dshi_2547 0.31 +0.4 2,703,479 - Dshi_2547 0.36 -3.1 2,703,578 + Dshi_2547 0.62 +0.1 2,703,586 - Dshi_2547 0.64 -0.2 2,703,586 - Dshi_2547 0.64 -1.7 2,703,601 - Dshi_2547 0.68 +0.4 2,703,663 + Dshi_2547 0.84 +0.6 2,703,671 - Dshi_2547 0.86 +0.2 2,703,731 - -0.9 2,703,742 + -0.3 2,703,742 + +1.7 2,703,750 - +0.6 2,703,804 + +0.1 2,703,817 - +0.4 2,703,844 + -0.9 2,703,912 - -0.0 2,703,926 + +0.6 2,703,926 + +1.0 2,703,926 + +0.2 2,703,934 - -0.4 2,703,934 - +0.3 2,703,934 - +1.4 2,703,950 + -1.0 2,703,992 + +0.9 2,704,122 - -0.4 2,704,139 - -0.9 2,704,147 - +0.2 2,704,147 - +1.1 2,704,163 + Dshi_2548 0.10 +0.6 2,704,215 - Dshi_2548 0.11 +0.2 2,704,295 + Dshi_2548 0.13 +0.0 2,704,301 + Dshi_2548 0.13 +0.6 2,704,302 + Dshi_2548 0.13 -1.0 2,704,302 + Dshi_2548 0.13 -0.4 2,704,303 - Dshi_2548 0.13 +2.5 2,704,395 - Dshi_2548 0.16 +0.0 2,704,442 - Dshi_2548 0.17 -2.2 2,704,452 + Dshi_2548 0.17 +0.1 2,704,452 + Dshi_2548 0.17 -1.8 2,704,452 + Dshi_2548 0.17 -0.5 2,704,452 + Dshi_2548 0.17 +0.1 2,704,460 - Dshi_2548 0.17 +0.3 2,704,460 - Dshi_2548 0.17 +2.1 2,704,460 - Dshi_2548 0.17 -0.4 2,704,465 + Dshi_2548 0.17 +0.6 2,704,500 - Dshi_2548 0.18 +0.8 2,704,511 + Dshi_2548 0.18 +0.4 2,704,572 + Dshi_2548 0.20 -0.9 2,704,720 - Dshi_2548 0.23 -0.5
Or see this region's nucleotide sequence