Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2512 and Dshi_2513 are separated by 15 nucleotides Dshi_2513 and Dshi_2514 are separated by 84 nucleotides
Dshi_2512: Dshi_2512 - TIM-barrel protein, yjbN family (RefSeq), at 2,676,018 to 2,677,034
_2512
Dshi_2513: Dshi_2513 - hypothetical protein (RefSeq), at 2,677,050 to 2,677,463
_2513
Dshi_2514: Dshi_2514 - hypothetical protein (RefSeq), at 2,677,548 to 2,678,540
_2514
Position (kb)
2677
2678 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2676.088 kb on - strand at 2676.137 kb on + strand, within Dshi_2512 at 2676.137 kb on + strand, within Dshi_2512 at 2676.145 kb on - strand, within Dshi_2512 at 2676.160 kb on - strand, within Dshi_2512 at 2676.203 kb on + strand, within Dshi_2512 at 2676.228 kb on - strand, within Dshi_2512 at 2676.242 kb on + strand, within Dshi_2512 at 2676.333 kb on - strand, within Dshi_2512 at 2676.333 kb on - strand, within Dshi_2512 at 2676.368 kb on - strand, within Dshi_2512 at 2676.432 kb on - strand, within Dshi_2512 at 2676.432 kb on - strand, within Dshi_2512 at 2676.432 kb on - strand, within Dshi_2512 at 2676.483 kb on + strand, within Dshi_2512 at 2676.506 kb on + strand, within Dshi_2512 at 2676.512 kb on - strand, within Dshi_2512 at 2676.570 kb on - strand, within Dshi_2512 at 2676.740 kb on + strand, within Dshi_2512 at 2676.766 kb on + strand, within Dshi_2512 at 2676.790 kb on - strand, within Dshi_2512 at 2676.886 kb on - strand, within Dshi_2512 at 2676.962 kb on - strand at 2677.038 kb on - strand at 2677.072 kb on + strand at 2677.079 kb on - strand at 2677.086 kb on + strand at 2677.160 kb on - strand, within Dshi_2513 at 2677.169 kb on - strand, within Dshi_2513 at 2677.256 kb on + strand, within Dshi_2513 at 2677.271 kb on + strand, within Dshi_2513 at 2677.309 kb on - strand, within Dshi_2513 at 2677.317 kb on + strand, within Dshi_2513 at 2677.324 kb on - strand, within Dshi_2513 at 2677.343 kb on + strand, within Dshi_2513 at 2677.356 kb on - strand, within Dshi_2513 at 2677.375 kb on + strand, within Dshi_2513 at 2677.376 kb on + strand, within Dshi_2513 at 2677.388 kb on - strand, within Dshi_2513 at 2677.421 kb on - strand, within Dshi_2513 at 2677.472 kb on + strand at 2677.496 kb on - strand at 2677.529 kb on + strand at 2677.540 kb on + strand at 2677.540 kb on + strand at 2677.542 kb on + strand at 2677.545 kb on + strand at 2677.547 kb on - strand at 2677.548 kb on - strand at 2677.569 kb on - strand at 2677.598 kb on - strand at 2677.667 kb on - strand, within Dshi_2514 at 2677.691 kb on + strand, within Dshi_2514 at 2677.692 kb on + strand, within Dshi_2514 at 2677.697 kb on + strand, within Dshi_2514 at 2677.697 kb on + strand, within Dshi_2514 at 2677.710 kb on - strand, within Dshi_2514 at 2677.785 kb on - strand, within Dshi_2514 at 2677.833 kb on - strand, within Dshi_2514 at 2677.838 kb on + strand, within Dshi_2514 at 2677.913 kb on - strand, within Dshi_2514 at 2677.930 kb on - strand, within Dshi_2514 at 2677.930 kb on - strand, within Dshi_2514 at 2677.937 kb on - strand, within Dshi_2514 at 2677.975 kb on + strand, within Dshi_2514 at 2677.978 kb on - strand, within Dshi_2514 at 2677.999 kb on - strand, within Dshi_2514 at 2678.046 kb on - strand, within Dshi_2514 at 2678.058 kb on + strand, within Dshi_2514 at 2678.058 kb on + strand, within Dshi_2514 at 2678.113 kb on + strand, within Dshi_2514 at 2678.120 kb on + strand, within Dshi_2514 at 2678.143 kb on - strand, within Dshi_2514 at 2678.157 kb on + strand, within Dshi_2514 at 2678.186 kb on - strand, within Dshi_2514 at 2678.268 kb on + strand, within Dshi_2514 at 2678.277 kb on - strand, within Dshi_2514 at 2678.443 kb on + strand at 2678.445 kb on + strand at 2678.453 kb on - strand at 2678.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,676,088 - +0.0 2,676,137 + Dshi_2512 0.12 -0.4 2,676,137 + Dshi_2512 0.12 +0.8 2,676,145 - Dshi_2512 0.12 -2.0 2,676,160 - Dshi_2512 0.14 -2.2 2,676,203 + Dshi_2512 0.18 -0.9 2,676,228 - Dshi_2512 0.21 -0.6 2,676,242 + Dshi_2512 0.22 +1.8 2,676,333 - Dshi_2512 0.31 +0.2 2,676,333 - Dshi_2512 0.31 -1.6 2,676,368 - Dshi_2512 0.34 -1.7 2,676,432 - Dshi_2512 0.41 -0.5 2,676,432 - Dshi_2512 0.41 -3.3 2,676,432 - Dshi_2512 0.41 +0.5 2,676,483 + Dshi_2512 0.46 -2.0 2,676,506 + Dshi_2512 0.48 +0.2 2,676,512 - Dshi_2512 0.49 -0.5 2,676,570 - Dshi_2512 0.54 -0.5 2,676,740 + Dshi_2512 0.71 -0.1 2,676,766 + Dshi_2512 0.74 +0.5 2,676,790 - Dshi_2512 0.76 +1.9 2,676,886 - Dshi_2512 0.85 +0.5 2,676,962 - -0.8 2,677,038 - -0.5 2,677,072 + +3.1 2,677,079 - -0.5 2,677,086 + +0.5 2,677,160 - Dshi_2513 0.27 -1.6 2,677,169 - Dshi_2513 0.29 -1.6 2,677,256 + Dshi_2513 0.50 +1.0 2,677,271 + Dshi_2513 0.53 -2.4 2,677,309 - Dshi_2513 0.63 +1.5 2,677,317 + Dshi_2513 0.64 +0.5 2,677,324 - Dshi_2513 0.66 -0.5 2,677,343 + Dshi_2513 0.71 -0.4 2,677,356 - Dshi_2513 0.74 -2.1 2,677,375 + Dshi_2513 0.79 -0.8 2,677,376 + Dshi_2513 0.79 +0.0 2,677,388 - Dshi_2513 0.82 +0.3 2,677,421 - Dshi_2513 0.90 -0.1 2,677,472 + -0.1 2,677,496 - -1.5 2,677,529 + -0.8 2,677,540 + +0.8 2,677,540 + -2.0 2,677,542 + +0.4 2,677,545 + -0.3 2,677,547 - -2.5 2,677,548 - +0.3 2,677,569 - +1.1 2,677,598 - +0.1 2,677,667 - Dshi_2514 0.12 +4.0 2,677,691 + Dshi_2514 0.14 +0.5 2,677,692 + Dshi_2514 0.15 +2.5 2,677,697 + Dshi_2514 0.15 -0.9 2,677,697 + Dshi_2514 0.15 +0.0 2,677,710 - Dshi_2514 0.16 -2.5 2,677,785 - Dshi_2514 0.24 +0.4 2,677,833 - Dshi_2514 0.29 -0.0 2,677,838 + Dshi_2514 0.29 +0.2 2,677,913 - Dshi_2514 0.37 +2.9 2,677,930 - Dshi_2514 0.38 -0.6 2,677,930 - Dshi_2514 0.38 -2.8 2,677,937 - Dshi_2514 0.39 +0.2 2,677,975 + Dshi_2514 0.43 -0.6 2,677,978 - Dshi_2514 0.43 +2.9 2,677,999 - Dshi_2514 0.45 +1.2 2,678,046 - Dshi_2514 0.50 +0.1 2,678,058 + Dshi_2514 0.51 +0.5 2,678,058 + Dshi_2514 0.51 -0.4 2,678,113 + Dshi_2514 0.57 +0.0 2,678,120 + Dshi_2514 0.58 +0.5 2,678,143 - Dshi_2514 0.60 -3.0 2,678,157 + Dshi_2514 0.61 -0.9 2,678,186 - Dshi_2514 0.64 -0.4 2,678,268 + Dshi_2514 0.73 +2.5 2,678,277 - Dshi_2514 0.73 -0.6 2,678,443 + -1.1 2,678,445 + -1.3 2,678,453 - -0.6 2,678,460 + +0.1
Or see this region's nucleotide sequence