Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2501 and Dshi_2502 overlap by 4 nucleotides
Dshi_2501: Dshi_2501 - ABC transporter related (RefSeq), at 2,657,746 to 2,659,947
_2501
Dshi_2502: Dshi_2502 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 2,659,944 to 2,661,263
_2502
Position (kb)
2657
2658
2659
2660 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2656.847 kb on + strand at 2656.847 kb on + strand at 2656.903 kb on - strand at 2656.911 kb on + strand at 2657.028 kb on + strand at 2657.092 kb on + strand at 2657.164 kb on + strand at 2657.174 kb on + strand at 2657.174 kb on + strand at 2657.201 kb on + strand at 2657.260 kb on + strand at 2657.268 kb on - strand at 2657.274 kb on + strand at 2657.288 kb on + strand at 2657.293 kb on + strand at 2657.329 kb on + strand at 2657.340 kb on - strand at 2657.420 kb on + strand at 2657.494 kb on + strand at 2657.499 kb on + strand at 2657.529 kb on + strand at 2657.750 kb on + strand at 2657.763 kb on + strand at 2657.922 kb on - strand at 2657.991 kb on - strand, within Dshi_2501 at 2658.011 kb on + strand, within Dshi_2501 at 2658.134 kb on + strand, within Dshi_2501 at 2658.142 kb on - strand, within Dshi_2501 at 2658.156 kb on + strand, within Dshi_2501 at 2658.183 kb on - strand, within Dshi_2501 at 2658.190 kb on - strand, within Dshi_2501 at 2658.263 kb on + strand, within Dshi_2501 at 2658.299 kb on + strand, within Dshi_2501 at 2658.299 kb on + strand, within Dshi_2501 at 2658.307 kb on - strand, within Dshi_2501 at 2658.307 kb on - strand, within Dshi_2501 at 2658.317 kb on + strand, within Dshi_2501 at 2658.384 kb on - strand, within Dshi_2501 at 2658.390 kb on - strand, within Dshi_2501 at 2658.397 kb on + strand, within Dshi_2501 at 2658.400 kb on - strand, within Dshi_2501 at 2658.430 kb on + strand, within Dshi_2501 at 2658.457 kb on + strand, within Dshi_2501 at 2658.487 kb on + strand, within Dshi_2501 at 2658.488 kb on - strand, within Dshi_2501 at 2658.541 kb on + strand, within Dshi_2501 at 2658.601 kb on - strand, within Dshi_2501 at 2658.604 kb on - strand, within Dshi_2501 at 2658.606 kb on + strand, within Dshi_2501 at 2658.617 kb on + strand, within Dshi_2501 at 2658.623 kb on - strand, within Dshi_2501 at 2658.709 kb on + strand, within Dshi_2501 at 2658.745 kb on + strand, within Dshi_2501 at 2658.753 kb on - strand, within Dshi_2501 at 2658.801 kb on + strand, within Dshi_2501 at 2658.834 kb on - strand, within Dshi_2501 at 2658.899 kb on + strand, within Dshi_2501 at 2658.907 kb on - strand, within Dshi_2501 at 2658.929 kb on + strand, within Dshi_2501 at 2658.931 kb on + strand, within Dshi_2501 at 2658.952 kb on - strand, within Dshi_2501 at 2658.996 kb on + strand, within Dshi_2501 at 2659.146 kb on + strand, within Dshi_2501 at 2659.148 kb on + strand, within Dshi_2501 at 2659.256 kb on + strand, within Dshi_2501 at 2659.279 kb on - strand, within Dshi_2501 at 2659.281 kb on + strand, within Dshi_2501 at 2659.300 kb on + strand, within Dshi_2501 at 2659.308 kb on - strand, within Dshi_2501 at 2659.430 kb on + strand, within Dshi_2501 at 2659.440 kb on + strand, within Dshi_2501 at 2659.471 kb on + strand, within Dshi_2501 at 2659.514 kb on + strand, within Dshi_2501 at 2659.522 kb on - strand, within Dshi_2501 at 2659.622 kb on - strand, within Dshi_2501 at 2659.632 kb on + strand, within Dshi_2501 at 2659.896 kb on - strand at 2660.069 kb on + strand at 2660.223 kb on - strand, within Dshi_2502 at 2660.450 kb on - strand, within Dshi_2502 at 2660.479 kb on + strand, within Dshi_2502 at 2660.518 kb on + strand at 2660.518 kb on + strand, within Dshi_2502 at 2660.518 kb on + strand, within Dshi_2502 at 2660.526 kb on - strand, within Dshi_2502 at 2660.526 kb on - strand, within Dshi_2502 at 2660.582 kb on + strand, within Dshi_2502 at 2660.582 kb on + strand, within Dshi_2502 at 2660.630 kb on - strand, within Dshi_2502 at 2660.654 kb on + strand, within Dshi_2502 at 2660.672 kb on - strand, within Dshi_2502 at 2660.825 kb on + strand, within Dshi_2502 at 2660.825 kb on + strand, within Dshi_2502 at 2660.861 kb on + strand, within Dshi_2502
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,656,847 + -1.0 2,656,847 + -3.6 2,656,903 - -2.0 2,656,911 + -2.3 2,657,028 + -1.6 2,657,092 + -1.6 2,657,164 + -1.8 2,657,174 + +0.5 2,657,174 + -0.5 2,657,201 + -2.5 2,657,260 + -1.8 2,657,268 - +1.0 2,657,274 + -0.7 2,657,288 + -2.5 2,657,293 + -1.3 2,657,329 + -1.0 2,657,340 - +0.8 2,657,420 + +0.5 2,657,494 + +0.5 2,657,499 + -1.5 2,657,529 + -0.4 2,657,750 + -0.5 2,657,763 + +1.1 2,657,922 - +2.9 2,657,991 - Dshi_2501 0.11 +0.5 2,658,011 + Dshi_2501 0.12 -0.6 2,658,134 + Dshi_2501 0.18 -2.0 2,658,142 - Dshi_2501 0.18 -1.5 2,658,156 + Dshi_2501 0.19 -1.0 2,658,183 - Dshi_2501 0.20 +0.5 2,658,190 - Dshi_2501 0.20 +2.5 2,658,263 + Dshi_2501 0.23 +0.5 2,658,299 + Dshi_2501 0.25 -1.0 2,658,299 + Dshi_2501 0.25 -1.6 2,658,307 - Dshi_2501 0.25 +2.5 2,658,307 - Dshi_2501 0.25 -0.5 2,658,317 + Dshi_2501 0.26 +3.3 2,658,384 - Dshi_2501 0.29 -3.3 2,658,390 - Dshi_2501 0.29 +1.1 2,658,397 + Dshi_2501 0.30 -2.3 2,658,400 - Dshi_2501 0.30 -1.5 2,658,430 + Dshi_2501 0.31 -1.5 2,658,457 + Dshi_2501 0.32 -2.8 2,658,487 + Dshi_2501 0.34 -0.0 2,658,488 - Dshi_2501 0.34 +0.5 2,658,541 + Dshi_2501 0.36 -1.0 2,658,601 - Dshi_2501 0.39 -0.5 2,658,604 - Dshi_2501 0.39 +2.5 2,658,606 + Dshi_2501 0.39 -0.4 2,658,617 + Dshi_2501 0.40 -2.3 2,658,623 - Dshi_2501 0.40 +0.5 2,658,709 + Dshi_2501 0.44 -1.6 2,658,745 + Dshi_2501 0.45 -0.9 2,658,753 - Dshi_2501 0.46 -1.8 2,658,801 + Dshi_2501 0.48 -0.7 2,658,834 - Dshi_2501 0.49 +0.2 2,658,899 + Dshi_2501 0.52 +0.5 2,658,907 - Dshi_2501 0.53 +1.3 2,658,929 + Dshi_2501 0.54 +1.0 2,658,931 + Dshi_2501 0.54 -1.8 2,658,952 - Dshi_2501 0.55 +1.7 2,658,996 + Dshi_2501 0.57 +0.5 2,659,146 + Dshi_2501 0.64 +1.5 2,659,148 + Dshi_2501 0.64 -0.3 2,659,256 + Dshi_2501 0.69 -0.2 2,659,279 - Dshi_2501 0.70 +3.3 2,659,281 + Dshi_2501 0.70 -0.3 2,659,300 + Dshi_2501 0.71 +0.7 2,659,308 - Dshi_2501 0.71 -1.8 2,659,430 + Dshi_2501 0.76 +0.0 2,659,440 + Dshi_2501 0.77 -0.5 2,659,471 + Dshi_2501 0.78 +0.5 2,659,514 + Dshi_2501 0.80 -1.8 2,659,522 - Dshi_2501 0.81 -1.8 2,659,622 - Dshi_2501 0.85 -0.7 2,659,632 + Dshi_2501 0.86 -1.0 2,659,896 - +0.2 2,660,069 + -1.7 2,660,223 - Dshi_2502 0.21 +0.5 2,660,450 - Dshi_2502 0.38 -0.8 2,660,479 + Dshi_2502 0.41 -1.1 2,660,518 + +0.5 2,660,518 + Dshi_2502 0.43 +0.3 2,660,518 + Dshi_2502 0.43 -0.6 2,660,526 - Dshi_2502 0.44 -3.5 2,660,526 - Dshi_2502 0.44 -1.2 2,660,582 + Dshi_2502 0.48 +1.4 2,660,582 + Dshi_2502 0.48 -1.5 2,660,630 - Dshi_2502 0.52 -1.8 2,660,654 + Dshi_2502 0.54 +0.5 2,660,672 - Dshi_2502 0.55 -0.7 2,660,825 + Dshi_2502 0.67 -0.2 2,660,825 + Dshi_2502 0.67 -1.2 2,660,861 + Dshi_2502 0.69 +1.9
Or see this region's nucleotide sequence