Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2436 and Dshi_2437 are separated by 9 nucleotides Dshi_2437 and Dshi_2438 are separated by 107 nucleotides Dshi_2438 and Dshi_2439 overlap by 4 nucleotides
Dshi_2436: Dshi_2436 - rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) (from data) , at 2,577,535 to 2,579,637
_2436
Dshi_2437: Dshi_2437 - L-rhamnose isomerase (EC 5.3.1.14) (from data) , at 2,579,647 to 2,580,885
_2437
Dshi_2438: Dshi_2438 - amidohydrolase 2 (RefSeq), at 2,580,993 to 2,581,871
_2438
Dshi_2439: Dshi_2439 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,581,868 to 2,583,352
_2439
Position (kb)
2579
2580
2581 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2578.706 kb on - strand, within Dshi_2436 at 2578.758 kb on - strand, within Dshi_2436 at 2578.966 kb on + strand, within Dshi_2436 at 2579.098 kb on - strand, within Dshi_2436 at 2579.108 kb on - strand, within Dshi_2436 at 2579.120 kb on + strand, within Dshi_2436 at 2579.123 kb on - strand, within Dshi_2436 at 2579.211 kb on + strand, within Dshi_2436 at 2579.245 kb on + strand, within Dshi_2436 at 2579.311 kb on + strand, within Dshi_2436 at 2579.312 kb on - strand, within Dshi_2436 at 2579.401 kb on + strand, within Dshi_2436 at 2579.403 kb on + strand, within Dshi_2436 at 2579.435 kb on + strand at 2579.443 kb on - strand at 2579.443 kb on - strand at 2579.443 kb on - strand at 2579.443 kb on - strand at 2579.443 kb on - strand at 2579.463 kb on - strand at 2579.485 kb on - strand at 2579.485 kb on - strand at 2579.694 kb on - strand at 2579.712 kb on - strand at 2579.715 kb on + strand at 2579.723 kb on - strand at 2579.812 kb on + strand, within Dshi_2437 at 2579.908 kb on - strand, within Dshi_2437 at 2579.976 kb on + strand, within Dshi_2437 at 2580.176 kb on + strand, within Dshi_2437 at 2580.184 kb on - strand, within Dshi_2437 at 2580.187 kb on + strand, within Dshi_2437 at 2580.393 kb on + strand, within Dshi_2437 at 2580.452 kb on + strand, within Dshi_2437 at 2580.460 kb on - strand, within Dshi_2437 at 2580.460 kb on - strand, within Dshi_2437 at 2580.724 kb on + strand, within Dshi_2437 at 2580.786 kb on + strand at 2580.854 kb on + strand at 2580.854 kb on + strand at 2580.996 kb on - strand at 2581.015 kb on - strand at 2581.063 kb on - strand at 2581.210 kb on - strand, within Dshi_2438 at 2581.275 kb on - strand, within Dshi_2438 at 2581.277 kb on - strand, within Dshi_2438 at 2581.332 kb on + strand, within Dshi_2438 at 2581.371 kb on + strand, within Dshi_2438 at 2581.696 kb on - strand, within Dshi_2438 at 2581.744 kb on + strand, within Dshi_2438
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,578,706 - Dshi_2436 0.56 +0.4 2,578,758 - Dshi_2436 0.58 +0.4 2,578,966 + Dshi_2436 0.68 -0.1 2,579,098 - Dshi_2436 0.74 -1.3 2,579,108 - Dshi_2436 0.75 -3.7 2,579,120 + Dshi_2436 0.75 -3.5 2,579,123 - Dshi_2436 0.76 +0.4 2,579,211 + Dshi_2436 0.80 +0.4 2,579,245 + Dshi_2436 0.81 -0.6 2,579,311 + Dshi_2436 0.84 -0.4 2,579,312 - Dshi_2436 0.84 -0.3 2,579,401 + Dshi_2436 0.89 -0.4 2,579,403 + Dshi_2436 0.89 -0.2 2,579,435 + -0.6 2,579,443 - -2.5 2,579,443 - -1.2 2,579,443 - -1.6 2,579,443 - -0.3 2,579,443 - -3.6 2,579,463 - -0.0 2,579,485 - -0.4 2,579,485 - +1.4 2,579,694 - +0.1 2,579,712 - -2.5 2,579,715 + -0.6 2,579,723 - +1.0 2,579,812 + Dshi_2437 0.13 -1.6 2,579,908 - Dshi_2437 0.21 -1.6 2,579,976 + Dshi_2437 0.27 -0.1 2,580,176 + Dshi_2437 0.43 -0.8 2,580,184 - Dshi_2437 0.43 -3.1 2,580,187 + Dshi_2437 0.44 -1.2 2,580,393 + Dshi_2437 0.60 -3.1 2,580,452 + Dshi_2437 0.65 -1.8 2,580,460 - Dshi_2437 0.66 -0.4 2,580,460 - Dshi_2437 0.66 -0.1 2,580,724 + Dshi_2437 0.87 -1.6 2,580,786 + -0.6 2,580,854 + +0.9 2,580,854 + -0.6 2,580,996 - -2.5 2,581,015 - -1.6 2,581,063 - -0.5 2,581,210 - Dshi_2438 0.25 +0.2 2,581,275 - Dshi_2438 0.32 +0.4 2,581,277 - Dshi_2438 0.32 +0.4 2,581,332 + Dshi_2438 0.39 -2.1 2,581,371 + Dshi_2438 0.43 -2.8 2,581,696 - Dshi_2438 0.80 +0.4 2,581,744 + Dshi_2438 0.85 -2.8
Or see this region's nucleotide sequence