Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2377 and Dshi_2378 are separated by 282 nucleotides Dshi_2378 and Dshi_2379 overlap by 4 nucleotides Dshi_2379 and Dshi_2380 overlap by 4 nucleotides
Dshi_2377: Dshi_2377 - protein of unknown function DUF839 (RefSeq), at 2,510,218 to 2,512,242
_2377
Dshi_2378: Dshi_2378 - alanine racemase (RefSeq), at 2,512,525 to 2,513,574
_2378
Dshi_2379: Dshi_2379 - protein of unknown function DUF140 (RefSeq), at 2,513,571 to 2,514,347
_2379
Dshi_2380: Dshi_2380 - ABC transporter related (RefSeq), at 2,514,344 to 2,515,117
_2380
Position (kb)
2512
2513
2514 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2511.699 kb on - strand, within Dshi_2377 at 2511.729 kb on + strand, within Dshi_2377 at 2511.875 kb on + strand, within Dshi_2377 at 2511.979 kb on - strand, within Dshi_2377 at 2511.984 kb on - strand, within Dshi_2377 at 2512.012 kb on + strand, within Dshi_2377 at 2512.039 kb on + strand, within Dshi_2377 at 2512.052 kb on - strand at 2512.100 kb on + strand at 2512.217 kb on - strand at 2512.348 kb on + strand at 2512.366 kb on + strand at 2512.402 kb on + strand at 2512.518 kb on - strand at 2512.532 kb on + strand at 2512.532 kb on + strand at 2512.631 kb on - strand, within Dshi_2378 at 2512.670 kb on + strand, within Dshi_2378 at 2512.680 kb on + strand, within Dshi_2378 at 2512.682 kb on - strand, within Dshi_2378 at 2512.731 kb on + strand, within Dshi_2378 at 2512.739 kb on - strand, within Dshi_2378 at 2512.798 kb on - strand, within Dshi_2378 at 2512.799 kb on - strand, within Dshi_2378 at 2512.875 kb on - strand, within Dshi_2378 at 2513.088 kb on + strand, within Dshi_2378 at 2513.178 kb on - strand, within Dshi_2378 at 2513.251 kb on + strand, within Dshi_2378 at 2513.365 kb on + strand, within Dshi_2378 at 2513.662 kb on + strand, within Dshi_2379 at 2513.687 kb on - strand, within Dshi_2379 at 2513.733 kb on - strand, within Dshi_2379 at 2513.871 kb on + strand, within Dshi_2379 at 2513.913 kb on - strand, within Dshi_2379 at 2514.001 kb on + strand, within Dshi_2379 at 2514.041 kb on + strand, within Dshi_2379 at 2514.233 kb on - strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.571 kb on + strand, within Dshi_2380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,511,699 - Dshi_2377 0.73 -0.7 2,511,729 + Dshi_2377 0.75 -2.9 2,511,875 + Dshi_2377 0.82 -0.8 2,511,979 - Dshi_2377 0.87 -0.8 2,511,984 - Dshi_2377 0.87 +0.1 2,512,012 + Dshi_2377 0.89 +2.1 2,512,039 + Dshi_2377 0.90 -0.3 2,512,052 - +0.2 2,512,100 + +1.3 2,512,217 - -0.0 2,512,348 + -0.8 2,512,366 + -0.8 2,512,402 + -1.2 2,512,518 - -3.9 2,512,532 + -4.2 2,512,532 + -3.7 2,512,631 - Dshi_2378 0.10 -1.3 2,512,670 + Dshi_2378 0.14 +0.3 2,512,680 + Dshi_2378 0.15 -0.7 2,512,682 - Dshi_2378 0.15 -1.0 2,512,731 + Dshi_2378 0.20 +0.3 2,512,739 - Dshi_2378 0.20 -3.9 2,512,798 - Dshi_2378 0.26 -2.5 2,512,799 - Dshi_2378 0.26 -1.7 2,512,875 - Dshi_2378 0.33 +0.3 2,513,088 + Dshi_2378 0.54 -4.3 2,513,178 - Dshi_2378 0.62 -5.4 2,513,251 + Dshi_2378 0.69 -2.0 2,513,365 + Dshi_2378 0.80 -2.3 2,513,662 + Dshi_2379 0.12 -0.3 2,513,687 - Dshi_2379 0.15 +0.3 2,513,733 - Dshi_2379 0.21 +0.3 2,513,871 + Dshi_2379 0.39 -2.3 2,513,913 - Dshi_2379 0.44 -3.2 2,514,001 + Dshi_2379 0.55 -3.2 2,514,041 + Dshi_2379 0.60 -0.7 2,514,233 - Dshi_2379 0.85 -5.0 2,514,251 + Dshi_2379 0.88 -1.7 2,514,251 + Dshi_2379 0.88 -2.9 2,514,251 + Dshi_2379 0.88 -2.7 2,514,571 + Dshi_2380 0.29 -0.7
Or see this region's nucleotide sequence