Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2364 and Dshi_2365 are separated by 757 nucleotides Dshi_2365 and Dshi_2366 are separated by 135 nucleotides Dshi_2366 and Dshi_2367 are separated by 112 nucleotides
Dshi_2364: Dshi_2364 - hypothetical protein (RefSeq), at 2,497,676 to 2,497,882
_2364
Dshi_2365: Dshi_2365 - urease, alpha subunit (RefSeq), at 2,498,640 to 2,500,349
_2365
Dshi_2366: Dshi_2366 - hypothetical protein (RefSeq), at 2,500,485 to 2,500,814
_2366
Dshi_2367: Dshi_2367 - alginate regulatory protein AlgP (RefSeq), at 2,500,927 to 2,501,649
_2367
Position (kb)
2498
2499
2500
2501 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2497.728 kb on + strand, within Dshi_2364 at 2497.745 kb on + strand, within Dshi_2364 at 2497.799 kb on - strand, within Dshi_2364 at 2497.915 kb on - strand at 2497.954 kb on + strand at 2498.121 kb on - strand at 2498.166 kb on - strand at 2498.195 kb on - strand at 2498.195 kb on - strand at 2498.385 kb on - strand at 2498.401 kb on - strand at 2498.489 kb on - strand at 2498.549 kb on + strand at 2498.567 kb on - strand at 2498.595 kb on - strand at 2498.600 kb on - strand at 2498.610 kb on - strand at 2498.658 kb on - strand at 2498.699 kb on - strand at 2498.717 kb on + strand at 2498.760 kb on + strand at 2498.789 kb on - strand at 2498.804 kb on - strand at 2498.833 kb on - strand, within Dshi_2365 at 2498.839 kb on - strand, within Dshi_2365 at 2498.926 kb on + strand, within Dshi_2365 at 2498.933 kb on - strand, within Dshi_2365 at 2498.989 kb on + strand, within Dshi_2365 at 2499.003 kb on - strand, within Dshi_2365 at 2499.015 kb on - strand, within Dshi_2365 at 2499.076 kb on + strand, within Dshi_2365 at 2499.236 kb on - strand, within Dshi_2365 at 2499.249 kb on + strand, within Dshi_2365 at 2499.249 kb on + strand, within Dshi_2365 at 2499.257 kb on - strand, within Dshi_2365 at 2499.257 kb on - strand, within Dshi_2365 at 2499.276 kb on + strand, within Dshi_2365 at 2499.420 kb on + strand, within Dshi_2365 at 2499.421 kb on - strand, within Dshi_2365 at 2499.435 kb on + strand, within Dshi_2365 at 2499.438 kb on - strand, within Dshi_2365 at 2499.459 kb on + strand, within Dshi_2365 at 2499.520 kb on + strand, within Dshi_2365 at 2499.552 kb on - strand, within Dshi_2365 at 2499.557 kb on - strand, within Dshi_2365 at 2499.598 kb on - strand, within Dshi_2365 at 2499.607 kb on - strand, within Dshi_2365 at 2499.676 kb on + strand, within Dshi_2365 at 2499.920 kb on + strand, within Dshi_2365 at 2500.082 kb on + strand, within Dshi_2365 at 2500.082 kb on + strand, within Dshi_2365 at 2500.096 kb on - strand, within Dshi_2365 at 2500.168 kb on + strand, within Dshi_2365 at 2500.176 kb on - strand, within Dshi_2365 at 2500.178 kb on + strand, within Dshi_2365 at 2500.306 kb on + strand at 2500.345 kb on + strand at 2500.439 kb on + strand at 2500.491 kb on - strand at 2500.540 kb on - strand, within Dshi_2366 at 2500.636 kb on + strand, within Dshi_2366 at 2500.636 kb on + strand, within Dshi_2366 at 2500.644 kb on - strand, within Dshi_2366 at 2500.644 kb on - strand, within Dshi_2366 at 2500.644 kb on - strand, within Dshi_2366 at 2500.679 kb on - strand, within Dshi_2366 at 2500.747 kb on + strand, within Dshi_2366 at 2500.750 kb on - strand, within Dshi_2366 at 2500.789 kb on + strand at 2500.791 kb on - strand at 2500.791 kb on - strand at 2500.797 kb on - strand at 2500.802 kb on - strand at 2500.802 kb on - strand at 2500.817 kb on - strand at 2500.843 kb on + strand at 2500.908 kb on + strand at 2500.913 kb on + strand at 2500.970 kb on - strand at 2500.979 kb on + strand at 2500.979 kb on + strand at 2500.987 kb on - strand at 2501.033 kb on - strand, within Dshi_2367 at 2501.145 kb on - strand, within Dshi_2367 at 2501.296 kb on - strand, within Dshi_2367 at 2501.306 kb on + strand, within Dshi_2367 at 2501.307 kb on - strand, within Dshi_2367
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,497,728 + Dshi_2364 0.25 +1.1 2,497,745 + Dshi_2364 0.33 +0.3 2,497,799 - Dshi_2364 0.59 +2.6 2,497,915 - +0.5 2,497,954 + -2.9 2,498,121 - +1.9 2,498,166 - -0.3 2,498,195 - -1.3 2,498,195 - -1.4 2,498,385 - -1.2 2,498,401 - -1.9 2,498,489 - +0.3 2,498,549 + -1.3 2,498,567 - -2.0 2,498,595 - +0.3 2,498,600 - -0.5 2,498,610 - -3.7 2,498,658 - -1.5 2,498,699 - -3.1 2,498,717 + +0.6 2,498,760 + -1.0 2,498,789 - -0.3 2,498,804 - -1.3 2,498,833 - Dshi_2365 0.11 -2.5 2,498,839 - Dshi_2365 0.12 -3.9 2,498,926 + Dshi_2365 0.17 +0.8 2,498,933 - Dshi_2365 0.17 -0.7 2,498,989 + Dshi_2365 0.20 -2.0 2,499,003 - Dshi_2365 0.21 -0.5 2,499,015 - Dshi_2365 0.22 +1.5 2,499,076 + Dshi_2365 0.25 +0.3 2,499,236 - Dshi_2365 0.35 +0.0 2,499,249 + Dshi_2365 0.36 -3.7 2,499,249 + Dshi_2365 0.36 -2.0 2,499,257 - Dshi_2365 0.36 -1.2 2,499,257 - Dshi_2365 0.36 +0.3 2,499,276 + Dshi_2365 0.37 -0.8 2,499,420 + Dshi_2365 0.46 -0.7 2,499,421 - Dshi_2365 0.46 +1.3 2,499,435 + Dshi_2365 0.46 -1.7 2,499,438 - Dshi_2365 0.47 -1.2 2,499,459 + Dshi_2365 0.48 +0.7 2,499,520 + Dshi_2365 0.51 +0.3 2,499,552 - Dshi_2365 0.53 +0.3 2,499,557 - Dshi_2365 0.54 +1.3 2,499,598 - Dshi_2365 0.56 -1.7 2,499,607 - Dshi_2365 0.57 +3.3 2,499,676 + Dshi_2365 0.61 +0.3 2,499,920 + Dshi_2365 0.75 -1.3 2,500,082 + Dshi_2365 0.84 -0.8 2,500,082 + Dshi_2365 0.84 -1.6 2,500,096 - Dshi_2365 0.85 +0.9 2,500,168 + Dshi_2365 0.89 +0.5 2,500,176 - Dshi_2365 0.90 -3.0 2,500,178 + Dshi_2365 0.90 -2.0 2,500,306 + -1.0 2,500,345 + -0.7 2,500,439 + +0.3 2,500,491 - +0.3 2,500,540 - Dshi_2366 0.17 -0.3 2,500,636 + Dshi_2366 0.46 +1.3 2,500,636 + Dshi_2366 0.46 -0.7 2,500,644 - Dshi_2366 0.48 -1.3 2,500,644 - Dshi_2366 0.48 -1.6 2,500,644 - Dshi_2366 0.48 -3.3 2,500,679 - Dshi_2366 0.59 -1.1 2,500,747 + Dshi_2366 0.79 +0.3 2,500,750 - Dshi_2366 0.80 -1.0 2,500,789 + +0.3 2,500,791 - -1.5 2,500,791 - -2.4 2,500,797 - +0.3 2,500,802 - -1.1 2,500,802 - +2.3 2,500,817 - -1.2 2,500,843 + +0.3 2,500,908 + -1.5 2,500,913 + -2.5 2,500,970 - -2.3 2,500,979 + -0.7 2,500,979 + -0.3 2,500,987 - -2.0 2,501,033 - Dshi_2367 0.15 +0.3 2,501,145 - Dshi_2367 0.30 -0.7 2,501,296 - Dshi_2367 0.51 -0.1 2,501,306 + Dshi_2367 0.52 -3.0 2,501,307 - Dshi_2367 0.53 -0.9
Or see this region's nucleotide sequence