Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2184 and Dshi_2185 are separated by 63 nucleotides Dshi_2185 and Dshi_2186 are separated by 263 nucleotides Dshi_2186 and Dshi_2187 are separated by 28 nucleotides Dshi_2187 and Dshi_2188 are separated by 12 nucleotides
Dshi_2184: Dshi_2184 - cytochrome B561 (RefSeq), at 2,311,440 to 2,312,642
_2184
Dshi_2185: Dshi_2185 - YceI family protein (RefSeq), at 2,312,706 to 2,313,290
_2185
Dshi_2186: Dshi_2186 - ribosomal protein S6 (RefSeq), at 2,313,554 to 2,313,907
_2186
Dshi_2187: Dshi_2187 - ribosomal protein S18 (RefSeq), at 2,313,936 to 2,314,163
_2187
Dshi_2188: Dshi_2188 - ribosomal protein L9 (RefSeq), at 2,314,176 to 2,314,805
_2188
Position (kb)
2312
2313
2314 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2311.731 kb on + strand, within Dshi_2184 at 2311.833 kb on + strand, within Dshi_2184 at 2311.865 kb on + strand, within Dshi_2184 at 2311.897 kb on - strand, within Dshi_2184 at 2312.168 kb on + strand, within Dshi_2184 at 2312.248 kb on + strand, within Dshi_2184 at 2312.487 kb on + strand, within Dshi_2184 at 2312.636 kb on + strand at 2312.644 kb on - strand at 2312.688 kb on + strand at 2312.741 kb on - strand at 2312.752 kb on + strand at 2312.765 kb on + strand, within Dshi_2185 at 2312.772 kb on + strand, within Dshi_2185 at 2312.802 kb on + strand, within Dshi_2185 at 2312.930 kb on - strand, within Dshi_2185 at 2313.072 kb on - strand, within Dshi_2185 at 2313.159 kb on + strand, within Dshi_2185 at 2313.163 kb on + strand, within Dshi_2185 at 2313.172 kb on - strand, within Dshi_2185 at 2313.264 kb on - strand at 2313.274 kb on - strand at 2313.292 kb on - strand at 2313.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,311,731 + Dshi_2184 0.24 -0.7 2,311,833 + Dshi_2184 0.33 +0.3 2,311,865 + Dshi_2184 0.35 -0.7 2,311,897 - Dshi_2184 0.38 -1.1 2,312,168 + Dshi_2184 0.61 -1.3 2,312,248 + Dshi_2184 0.67 -2.1 2,312,487 + Dshi_2184 0.87 -2.6 2,312,636 + +3.9 2,312,644 - -0.2 2,312,688 + -1.5 2,312,741 - -1.5 2,312,752 + -1.0 2,312,765 + Dshi_2185 0.10 +1.9 2,312,772 + Dshi_2185 0.11 -0.1 2,312,802 + Dshi_2185 0.16 -0.4 2,312,930 - Dshi_2185 0.38 -0.8 2,313,072 - Dshi_2185 0.63 +0.1 2,313,159 + Dshi_2185 0.77 -0.2 2,313,163 + Dshi_2185 0.78 -0.9 2,313,172 - Dshi_2185 0.80 +0.3 2,313,264 - -0.7 2,313,274 - -1.5 2,313,292 - -0.9 2,313,332 - -1.5
Or see this region's nucleotide sequence