Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2167 and Dshi_2168 overlap by 17 nucleotides Dshi_2168 and Dshi_2169 overlap by 4 nucleotides Dshi_2169 and Dshi_2170 are separated by 5 nucleotides Dshi_2170 and Dshi_2171 are separated by 21 nucleotides Dshi_2171 and Dshi_2172 overlap by 4 nucleotides Dshi_2172 and Dshi_2173 overlap by 4 nucleotides
Dshi_2167: Dshi_2167 - phage-related minor tail protein-like protein (RefSeq), at 2,298,277 to 2,298,945
_2167
Dshi_2168: Dshi_2168 - hypothetical protein (RefSeq), at 2,298,929 to 2,299,144
_2168
Dshi_2169: Dshi_2169 - hypothetical protein (RefSeq), at 2,299,141 to 2,299,470
_2169
Dshi_2170: Dshi_2170 - phage major tail protein, TP901-1 family (RefSeq), at 2,299,476 to 2,299,889
_2170
Dshi_2171: Dshi_2171 - hypothetical protein (RefSeq), at 2,299,911 to 2,300,321
_2171
Dshi_2172: Dshi_2172 - phage head-tail adaptor, putative (RefSeq), at 2,300,318 to 2,300,656
_2172
Dshi_2173: Dshi_2173 - hypothetical protein (RefSeq), at 2,300,653 to 2,301,243
_2173
Position (kb)
2299
2300
2301 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2298.920 kb on - strand at 2299.059 kb on - strand, within Dshi_2168 at 2299.090 kb on + strand, within Dshi_2168 at 2299.090 kb on + strand, within Dshi_2168 at 2299.105 kb on + strand, within Dshi_2168 at 2299.157 kb on + strand at 2299.221 kb on - strand, within Dshi_2169 at 2299.262 kb on + strand, within Dshi_2169 at 2299.270 kb on - strand, within Dshi_2169 at 2299.305 kb on - strand, within Dshi_2169 at 2299.318 kb on + strand, within Dshi_2169 at 2299.318 kb on + strand, within Dshi_2169 at 2299.318 kb on + strand, within Dshi_2169 at 2299.326 kb on - strand, within Dshi_2169 at 2299.336 kb on - strand, within Dshi_2169 at 2299.384 kb on - strand, within Dshi_2169 at 2299.395 kb on + strand, within Dshi_2169 at 2299.415 kb on + strand, within Dshi_2169 at 2299.415 kb on + strand, within Dshi_2169 at 2299.420 kb on + strand, within Dshi_2169 at 2299.423 kb on - strand, within Dshi_2169 at 2299.428 kb on - strand, within Dshi_2169 at 2299.444 kb on + strand at 2299.448 kb on - strand at 2299.462 kb on - strand at 2299.502 kb on - strand at 2299.698 kb on + strand, within Dshi_2170 at 2299.716 kb on - strand, within Dshi_2170 at 2299.716 kb on - strand, within Dshi_2170 at 2299.716 kb on - strand, within Dshi_2170 at 2299.733 kb on - strand, within Dshi_2170 at 2299.733 kb on - strand, within Dshi_2170 at 2299.762 kb on - strand, within Dshi_2170 at 2299.771 kb on - strand, within Dshi_2170 at 2299.847 kb on + strand, within Dshi_2170 at 2299.885 kb on + strand at 2299.886 kb on + strand at 2299.893 kb on - strand at 2299.893 kb on - strand at 2299.904 kb on - strand at 2300.005 kb on - strand, within Dshi_2171 at 2300.035 kb on - strand, within Dshi_2171 at 2300.114 kb on - strand, within Dshi_2171 at 2300.145 kb on + strand, within Dshi_2171 at 2300.153 kb on - strand, within Dshi_2171 at 2300.153 kb on - strand, within Dshi_2171 at 2300.195 kb on - strand, within Dshi_2171 at 2300.279 kb on + strand, within Dshi_2171 at 2300.321 kb on + strand at 2300.398 kb on - strand, within Dshi_2172 at 2300.433 kb on - strand, within Dshi_2172 at 2300.458 kb on - strand, within Dshi_2172 at 2300.553 kb on - strand, within Dshi_2172 at 2300.569 kb on + strand, within Dshi_2172 at 2300.603 kb on + strand, within Dshi_2172 at 2300.752 kb on - strand, within Dshi_2173 at 2300.781 kb on - strand, within Dshi_2173 at 2300.788 kb on + strand, within Dshi_2173 at 2300.805 kb on + strand, within Dshi_2173 at 2300.805 kb on + strand, within Dshi_2173 at 2300.813 kb on - strand, within Dshi_2173 at 2300.927 kb on - strand, within Dshi_2173 at 2301.027 kb on + strand, within Dshi_2173 at 2301.031 kb on + strand, within Dshi_2173 at 2301.040 kb on + strand, within Dshi_2173 at 2301.045 kb on + strand, within Dshi_2173 at 2301.050 kb on + strand, within Dshi_2173 at 2301.050 kb on + strand, within Dshi_2173 at 2301.058 kb on - strand, within Dshi_2173 at 2301.073 kb on + strand, within Dshi_2173 at 2301.081 kb on - strand, within Dshi_2173 at 2301.083 kb on + strand, within Dshi_2173 at 2301.208 kb on + strand at 2301.208 kb on + strand at 2301.224 kb on - strand at 2301.252 kb on + strand at 2301.300 kb on + strand at 2301.303 kb on - strand at 2301.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,298,920 - +1.2 2,299,059 - Dshi_2168 0.60 -2.0 2,299,090 + Dshi_2168 0.75 -0.5 2,299,090 + Dshi_2168 0.75 +3.3 2,299,105 + Dshi_2168 0.81 -0.3 2,299,157 + -0.7 2,299,221 - Dshi_2169 0.24 +0.3 2,299,262 + Dshi_2169 0.37 +0.3 2,299,270 - Dshi_2169 0.39 -0.4 2,299,305 - Dshi_2169 0.50 -0.7 2,299,318 + Dshi_2169 0.54 -0.9 2,299,318 + Dshi_2169 0.54 -0.2 2,299,318 + Dshi_2169 0.54 -0.6 2,299,326 - Dshi_2169 0.56 +0.3 2,299,336 - Dshi_2169 0.59 -0.2 2,299,384 - Dshi_2169 0.74 +1.3 2,299,395 + Dshi_2169 0.77 -0.3 2,299,415 + Dshi_2169 0.83 -0.7 2,299,415 + Dshi_2169 0.83 -2.1 2,299,420 + Dshi_2169 0.85 -1.7 2,299,423 - Dshi_2169 0.85 -1.5 2,299,428 - Dshi_2169 0.87 -0.4 2,299,444 + -0.8 2,299,448 - +0.7 2,299,462 - +1.1 2,299,502 - +3.1 2,299,698 + Dshi_2170 0.54 -1.5 2,299,716 - Dshi_2170 0.58 -2.7 2,299,716 - Dshi_2170 0.58 +0.5 2,299,716 - Dshi_2170 0.58 +0.3 2,299,733 - Dshi_2170 0.62 -0.7 2,299,733 - Dshi_2170 0.62 -3.1 2,299,762 - Dshi_2170 0.69 +1.1 2,299,771 - Dshi_2170 0.71 +0.7 2,299,847 + Dshi_2170 0.90 +0.4 2,299,885 + +0.3 2,299,886 + +0.0 2,299,893 - -2.4 2,299,893 - -0.8 2,299,904 - -1.0 2,300,005 - Dshi_2171 0.23 +0.6 2,300,035 - Dshi_2171 0.30 +0.1 2,300,114 - Dshi_2171 0.49 +0.7 2,300,145 + Dshi_2171 0.57 -0.4 2,300,153 - Dshi_2171 0.59 -0.3 2,300,153 - Dshi_2171 0.59 +1.9 2,300,195 - Dshi_2171 0.69 -0.4 2,300,279 + Dshi_2171 0.90 -2.0 2,300,321 + +2.1 2,300,398 - Dshi_2172 0.24 -0.2 2,300,433 - Dshi_2172 0.34 -0.4 2,300,458 - Dshi_2172 0.41 -0.9 2,300,553 - Dshi_2172 0.69 +2.3 2,300,569 + Dshi_2172 0.74 +0.6 2,300,603 + Dshi_2172 0.84 -1.7 2,300,752 - Dshi_2173 0.17 +0.6 2,300,781 - Dshi_2173 0.22 +1.9 2,300,788 + Dshi_2173 0.23 -1.5 2,300,805 + Dshi_2173 0.26 -0.0 2,300,805 + Dshi_2173 0.26 -0.7 2,300,813 - Dshi_2173 0.27 -1.8 2,300,927 - Dshi_2173 0.46 -2.5 2,301,027 + Dshi_2173 0.63 -0.9 2,301,031 + Dshi_2173 0.64 -1.4 2,301,040 + Dshi_2173 0.65 -1.5 2,301,045 + Dshi_2173 0.66 -2.8 2,301,050 + Dshi_2173 0.67 -0.9 2,301,050 + Dshi_2173 0.67 -2.3 2,301,058 - Dshi_2173 0.69 +0.7 2,301,073 + Dshi_2173 0.71 -2.0 2,301,081 - Dshi_2173 0.72 -0.5 2,301,083 + Dshi_2173 0.73 +0.8 2,301,208 + +2.6 2,301,208 + -0.1 2,301,224 - -0.6 2,301,252 + -2.2 2,301,300 + -1.5 2,301,303 - -3.3 2,301,309 + -1.5
Or see this region's nucleotide sequence