Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2152 and Dshi_2153 are separated by 222 nucleotides Dshi_2153 and Dshi_2154 overlap by 8 nucleotides Dshi_2154 and Dshi_2155 are separated by 163 nucleotides
Dshi_2152: Dshi_2152 - hypothetical protein (RefSeq), at 2,281,595 to 2,282,566
_2152
Dshi_2153: Dshi_2153 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 2,282,789 to 2,283,337
_2153
Dshi_2154: Dshi_2154 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 2,283,330 to 2,283,854
_2154
Dshi_2155: Dshi_2155 - Phosphoglycerate kinase (RefSeq), at 2,284,018 to 2,285,199
_2155
Position (kb)
2282
2283
2284 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2281.803 kb on - strand, within Dshi_2152 at 2281.909 kb on + strand, within Dshi_2152 at 2281.948 kb on + strand, within Dshi_2152 at 2282.041 kb on + strand, within Dshi_2152 at 2282.072 kb on - strand, within Dshi_2152 at 2282.275 kb on + strand, within Dshi_2152 at 2282.296 kb on - strand, within Dshi_2152 at 2282.297 kb on + strand, within Dshi_2152 at 2282.297 kb on + strand, within Dshi_2152 at 2282.410 kb on + strand, within Dshi_2152 at 2282.535 kb on + strand at 2282.578 kb on + strand at 2282.580 kb on - strand at 2282.653 kb on - strand at 2282.698 kb on + strand at 2282.698 kb on + strand at 2282.772 kb on - strand at 2282.800 kb on - strand at 2282.841 kb on - strand at 2282.886 kb on - strand, within Dshi_2153 at 2282.886 kb on - strand, within Dshi_2153 at 2282.892 kb on + strand, within Dshi_2153 at 2282.894 kb on - strand, within Dshi_2153 at 2282.917 kb on - strand, within Dshi_2153 at 2282.920 kb on - strand, within Dshi_2153 at 2282.971 kb on + strand, within Dshi_2153 at 2282.979 kb on - strand, within Dshi_2153 at 2283.095 kb on - strand, within Dshi_2153 at 2283.129 kb on - strand, within Dshi_2153 at 2283.267 kb on + strand, within Dshi_2153 at 2283.282 kb on + strand, within Dshi_2153 at 2283.312 kb on + strand at 2283.348 kb on - strand at 2283.432 kb on + strand, within Dshi_2154 at 2283.432 kb on + strand, within Dshi_2154 at 2283.432 kb on + strand, within Dshi_2154 at 2283.432 kb on + strand, within Dshi_2154 at 2283.432 kb on + strand, within Dshi_2154 at 2283.439 kb on + strand, within Dshi_2154 at 2283.440 kb on - strand, within Dshi_2154 at 2283.440 kb on - strand, within Dshi_2154 at 2283.440 kb on - strand, within Dshi_2154 at 2283.452 kb on - strand, within Dshi_2154 at 2283.504 kb on + strand, within Dshi_2154 at 2283.542 kb on + strand, within Dshi_2154 at 2283.592 kb on - strand, within Dshi_2154 at 2283.649 kb on + strand, within Dshi_2154 at 2283.717 kb on + strand, within Dshi_2154 at 2283.733 kb on + strand, within Dshi_2154 at 2283.787 kb on + strand, within Dshi_2154 at 2283.875 kb on + strand at 2283.875 kb on + strand at 2283.875 kb on - strand at 2283.883 kb on - strand at 2283.931 kb on - strand at 2283.939 kb on + strand at 2283.941 kb on - strand at 2283.942 kb on - strand at 2283.956 kb on + strand at 2284.015 kb on + strand at 2284.040 kb on - strand at 2284.310 kb on + strand, within Dshi_2155 at 2284.320 kb on - strand, within Dshi_2155
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,281,803 - Dshi_2152 0.21 -2.0 2,281,909 + Dshi_2152 0.32 +3.2 2,281,948 + Dshi_2152 0.36 -3.1 2,282,041 + Dshi_2152 0.46 -0.1 2,282,072 - Dshi_2152 0.49 -0.1 2,282,275 + Dshi_2152 0.70 -0.7 2,282,296 - Dshi_2152 0.72 -0.1 2,282,297 + Dshi_2152 0.72 -1.1 2,282,297 + Dshi_2152 0.72 -0.2 2,282,410 + Dshi_2152 0.84 +2.9 2,282,535 + +0.2 2,282,578 + -0.4 2,282,580 - +0.4 2,282,653 - -1.5 2,282,698 + +0.0 2,282,698 + -0.6 2,282,772 - +1.8 2,282,800 - -0.9 2,282,841 - +0.8 2,282,886 - Dshi_2153 0.18 -0.5 2,282,886 - Dshi_2153 0.18 +0.8 2,282,892 + Dshi_2153 0.19 -0.5 2,282,894 - Dshi_2153 0.19 -0.9 2,282,917 - Dshi_2153 0.23 -1.3 2,282,920 - Dshi_2153 0.24 -0.2 2,282,971 + Dshi_2153 0.33 -0.8 2,282,979 - Dshi_2153 0.35 +0.2 2,283,095 - Dshi_2153 0.56 +0.2 2,283,129 - Dshi_2153 0.62 -0.8 2,283,267 + Dshi_2153 0.87 +0.9 2,283,282 + Dshi_2153 0.90 -1.1 2,283,312 + +0.5 2,283,348 - +0.3 2,283,432 + Dshi_2154 0.19 +0.7 2,283,432 + Dshi_2154 0.19 -2.8 2,283,432 + Dshi_2154 0.19 -0.4 2,283,432 + Dshi_2154 0.19 +0.3 2,283,432 + Dshi_2154 0.19 +0.8 2,283,439 + Dshi_2154 0.21 -0.9 2,283,440 - Dshi_2154 0.21 +0.8 2,283,440 - Dshi_2154 0.21 +0.5 2,283,440 - Dshi_2154 0.21 -0.1 2,283,452 - Dshi_2154 0.23 -3.1 2,283,504 + Dshi_2154 0.33 -0.1 2,283,542 + Dshi_2154 0.40 -1.0 2,283,592 - Dshi_2154 0.50 +0.9 2,283,649 + Dshi_2154 0.61 -0.3 2,283,717 + Dshi_2154 0.74 +1.5 2,283,733 + Dshi_2154 0.77 +0.1 2,283,787 + Dshi_2154 0.87 -1.1 2,283,875 + -0.1 2,283,875 + +0.9 2,283,875 - -0.5 2,283,883 - +1.1 2,283,931 - -0.1 2,283,939 + +1.6 2,283,941 - -1.0 2,283,942 - -0.2 2,283,956 + -0.3 2,284,015 + -4.5 2,284,040 - +1.3 2,284,310 + Dshi_2155 0.25 -1.2 2,284,320 - Dshi_2155 0.26 -2.2
Or see this region's nucleotide sequence