Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2045
Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Fusidic 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,163,251 | - | Dshi_2044 | 0.42 | -0.3 | |
2,163,273 | - | Dshi_2044 | 0.44 | -0.7 | |
2,163,315 | - | Dshi_2044 | 0.47 | +1.5 | |
2,163,315 | - | Dshi_2044 | 0.47 | -0.0 | |
2,163,564 | - | Dshi_2044 | 0.64 | -1.3 | |
2,163,599 | + | Dshi_2044 | 0.66 | -1.4 | |
2,163,661 | + | Dshi_2044 | 0.70 | +2.3 | |
2,163,671 | + | Dshi_2044 | 0.71 | +0.4 | |
2,163,799 | + | Dshi_2044 | 0.80 | +1.8 | |
2,163,799 | - | Dshi_2044 | 0.80 | +1.2 | |
2,163,805 | - | Dshi_2044 | 0.80 | +1.5 | |
2,163,807 | - | Dshi_2044 | 0.80 | +0.4 | |
2,163,844 | - | Dshi_2044 | 0.83 | +2.5 | |
2,163,924 | - | Dshi_2044 | 0.88 | +1.5 | |
2,163,952 | - | -0.2 | |||
2,163,979 | + | +3.1 | |||
2,164,072 | + | -0.7 | |||
2,164,149 | + | -1.8 | |||
2,164,157 | - | -1.5 | |||
2,164,177 | + | -2.8 | |||
2,164,177 | + | -1.8 | |||
2,164,185 | - | -3.2 | |||
2,166,217 | + | Dshi_5006 | 0.21 | -2.8 | |
2,166,217 | + | Dshi_5006 | 0.21 | -0.1 | |
2,166,339 | - | Dshi_5006 | 0.31 | +0.5 | |
2,166,794 | - | Dshi_5006 | 0.70 | -4.0 |
Or see this region's nucleotide sequence