Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2022

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2021 and Dshi_2022 are separated by 86 nucleotidesDshi_2022 and Dshi_2023 are separated by 4 nucleotides Dshi_2021: Dshi_2021 - extracellular solute-binding protein family 1 (RefSeq), at 2,141,284 to 2,142,312 _2021 Dshi_2022: Dshi_2022 - hypothetical protein (RefSeq), at 2,142,399 to 2,142,815 _2022 Dshi_2023: Dshi_2023 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,142,820 to 2,144,499 _2023 Position (kb) 2142 2143Strain fitness (log2 ratio) -3 -2 -1 0 1at 2142.442 kb on - strand, within Dshi_2022at 2142.520 kb on + strand, within Dshi_2022at 2142.608 kb on + strand, within Dshi_2022at 2142.670 kb on + strand, within Dshi_2022at 2142.773 kb on + strand, within Dshi_2022at 2142.811 kb on + strandat 2142.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,142,442 - Dshi_2022 0.10 -1.0
2,142,520 + Dshi_2022 0.29 -0.7
2,142,608 + Dshi_2022 0.50 -2.9
2,142,670 + Dshi_2022 0.65 +0.5
2,142,773 + Dshi_2022 0.90 -0.1
2,142,811 + -2.9
2,142,811 + -1.9

Or see this region's nucleotide sequence