Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2020 and Dshi_2021 are separated by 228 nucleotides Dshi_2021 and Dshi_2022 are separated by 86 nucleotides Dshi_2022 and Dshi_2023 are separated by 4 nucleotides
Dshi_2020: Dshi_2020 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I (RefSeq), at 2,139,424 to 2,141,055
_2020
Dshi_2021: Dshi_2021 - extracellular solute-binding protein family 1 (RefSeq), at 2,141,284 to 2,142,312
_2021
Dshi_2022: Dshi_2022 - hypothetical protein (RefSeq), at 2,142,399 to 2,142,815
_2022
Dshi_2023: Dshi_2023 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,142,820 to 2,144,499
_2023
Position (kb)
2141
2142
2143 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2140.291 kb on + strand, within Dshi_2020 at 2140.309 kb on - strand, within Dshi_2020 at 2140.318 kb on + strand, within Dshi_2020 at 2140.331 kb on - strand, within Dshi_2020 at 2140.367 kb on - strand, within Dshi_2020 at 2140.393 kb on + strand, within Dshi_2020 at 2140.488 kb on - strand, within Dshi_2020 at 2140.497 kb on - strand, within Dshi_2020 at 2140.523 kb on + strand, within Dshi_2020 at 2140.568 kb on - strand, within Dshi_2020 at 2140.644 kb on + strand, within Dshi_2020 at 2140.670 kb on - strand, within Dshi_2020 at 2140.678 kb on - strand, within Dshi_2020 at 2140.712 kb on - strand, within Dshi_2020 at 2140.748 kb on - strand, within Dshi_2020 at 2140.835 kb on + strand, within Dshi_2020 at 2140.840 kb on + strand, within Dshi_2020 at 2140.985 kb on + strand at 2140.985 kb on + strand at 2140.993 kb on - strand at 2140.993 kb on - strand at 2140.995 kb on + strand at 2141.003 kb on - strand at 2141.032 kb on + strand at 2141.077 kb on - strand at 2141.140 kb on + strand at 2141.157 kb on + strand at 2141.167 kb on - strand at 2142.442 kb on - strand, within Dshi_2022 at 2142.520 kb on + strand, within Dshi_2022 at 2142.608 kb on + strand, within Dshi_2022 at 2142.670 kb on + strand, within Dshi_2022 at 2142.773 kb on + strand, within Dshi_2022 at 2142.811 kb on + strand at 2142.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,140,291 + Dshi_2020 0.53 -0.5 2,140,309 - Dshi_2020 0.54 +0.1 2,140,318 + Dshi_2020 0.55 -2.0 2,140,331 - Dshi_2020 0.56 -3.0 2,140,367 - Dshi_2020 0.58 -1.3 2,140,393 + Dshi_2020 0.59 +0.9 2,140,488 - Dshi_2020 0.65 -3.0 2,140,497 - Dshi_2020 0.66 -1.9 2,140,523 + Dshi_2020 0.67 -0.1 2,140,568 - Dshi_2020 0.70 +0.1 2,140,644 + Dshi_2020 0.75 -2.2 2,140,670 - Dshi_2020 0.76 -0.3 2,140,678 - Dshi_2020 0.77 -1.9 2,140,712 - Dshi_2020 0.79 -0.1 2,140,748 - Dshi_2020 0.81 -1.4 2,140,835 + Dshi_2020 0.86 -0.2 2,140,840 + Dshi_2020 0.87 -0.5 2,140,985 + -0.7 2,140,985 + -0.9 2,140,993 - -1.8 2,140,993 - +3.0 2,140,995 + -1.4 2,141,003 - -0.9 2,141,032 + -0.6 2,141,077 - -0.4 2,141,140 + -4.1 2,141,157 + -1.3 2,141,167 - +0.7 2,142,442 - Dshi_2022 0.10 -1.0 2,142,520 + Dshi_2022 0.29 -0.7 2,142,608 + Dshi_2022 0.50 -2.9 2,142,670 + Dshi_2022 0.65 +0.5 2,142,773 + Dshi_2022 0.90 -0.1 2,142,811 + -2.9 2,142,811 + -1.9
Or see this region's nucleotide sequence