Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1972 and Dshi_1973 are separated by 59 nucleotides Dshi_1973 and Dshi_1974 overlap by 4 nucleotides
Dshi_1972: Dshi_1972 - GntR domain protein (RefSeq), at 2,085,434 to 2,086,216
_1972
Dshi_1973: Dshi_1973 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 2,086,276 to 2,087,394
_1973
Dshi_1974: Dshi_1974 - hypothetical protein (RefSeq), at 2,087,391 to 2,088,665
_1974
Position (kb)
2086
2087
2088 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2085.502 kb on + strand at 2085.576 kb on + strand, within Dshi_1972 at 2085.668 kb on - strand, within Dshi_1972 at 2085.857 kb on + strand, within Dshi_1972 at 2085.922 kb on - strand, within Dshi_1972 at 2086.196 kb on + strand at 2086.243 kb on + strand at 2086.248 kb on + strand at 2086.251 kb on - strand at 2086.469 kb on + strand, within Dshi_1973 at 2086.510 kb on - strand, within Dshi_1973 at 2086.567 kb on - strand, within Dshi_1973 at 2086.578 kb on - strand, within Dshi_1973 at 2086.708 kb on + strand, within Dshi_1973 at 2086.786 kb on + strand, within Dshi_1973 at 2086.875 kb on - strand, within Dshi_1973 at 2086.888 kb on + strand, within Dshi_1973 at 2086.896 kb on - strand, within Dshi_1973 at 2086.968 kb on - strand, within Dshi_1973 at 2086.968 kb on - strand, within Dshi_1973 at 2087.071 kb on - strand, within Dshi_1973 at 2087.220 kb on + strand, within Dshi_1973 at 2087.223 kb on - strand, within Dshi_1973 at 2087.225 kb on - strand, within Dshi_1973 at 2087.340 kb on - strand at 2087.396 kb on - strand at 2087.512 kb on - strand at 2087.568 kb on - strand, within Dshi_1974 at 2087.635 kb on - strand, within Dshi_1974 at 2087.732 kb on - strand, within Dshi_1974 at 2087.763 kb on - strand, within Dshi_1974 at 2087.973 kb on + strand, within Dshi_1974 at 2087.985 kb on + strand, within Dshi_1974 at 2087.993 kb on - strand, within Dshi_1974
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,085,502 + +0.8 2,085,576 + Dshi_1972 0.18 -2.3 2,085,668 - Dshi_1972 0.30 -2.2 2,085,857 + Dshi_1972 0.54 +1.0 2,085,922 - Dshi_1972 0.62 +0.5 2,086,196 + -1.8 2,086,243 + +0.5 2,086,248 + -3.5 2,086,251 - -1.1 2,086,469 + Dshi_1973 0.17 +0.5 2,086,510 - Dshi_1973 0.21 +2.5 2,086,567 - Dshi_1973 0.26 -0.8 2,086,578 - Dshi_1973 0.27 +0.2 2,086,708 + Dshi_1973 0.39 -2.0 2,086,786 + Dshi_1973 0.46 +0.5 2,086,875 - Dshi_1973 0.54 -1.9 2,086,888 + Dshi_1973 0.55 -0.5 2,086,896 - Dshi_1973 0.55 -1.1 2,086,968 - Dshi_1973 0.62 -2.3 2,086,968 - Dshi_1973 0.62 -1.2 2,087,071 - Dshi_1973 0.71 -0.1 2,087,220 + Dshi_1973 0.84 +1.1 2,087,223 - Dshi_1973 0.85 -2.2 2,087,225 - Dshi_1973 0.85 +3.6 2,087,340 - +2.1 2,087,396 - +1.1 2,087,512 - -0.3 2,087,568 - Dshi_1974 0.14 -0.1 2,087,635 - Dshi_1974 0.19 +0.5 2,087,732 - Dshi_1974 0.27 -1.1 2,087,763 - Dshi_1974 0.29 +0.5 2,087,973 + Dshi_1974 0.46 -0.5 2,087,985 + Dshi_1974 0.47 +0.5 2,087,993 - Dshi_1974 0.47 -0.9
Or see this region's nucleotide sequence