Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1890 and Dshi_1891 are separated by 201 nucleotides Dshi_1891 and Dshi_1892 are separated by 76 nucleotides
Dshi_1890: Dshi_1890 - Sel1 domain protein repeat-containing protein (RefSeq), at 1,967,456 to 1,968,577
_1890
Dshi_1891: Dshi_1891 - globin (RefSeq), at 1,968,779 to 1,969,207
_1891
Dshi_1892: Dshi_1892 - domain of unknown function DUF1745 (RefSeq), at 1,969,284 to 1,970,432
_1892
Position (kb)
1968
1969
1970 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1967.878 kb on + strand, within Dshi_1890 at 1967.886 kb on - strand, within Dshi_1890 at 1967.906 kb on + strand, within Dshi_1890 at 1968.040 kb on + strand, within Dshi_1890 at 1968.170 kb on + strand, within Dshi_1890 at 1968.225 kb on + strand, within Dshi_1890 at 1968.232 kb on - strand, within Dshi_1890 at 1968.233 kb on - strand, within Dshi_1890 at 1968.295 kb on - strand, within Dshi_1890 at 1968.377 kb on - strand, within Dshi_1890 at 1968.445 kb on + strand, within Dshi_1890 at 1968.462 kb on + strand, within Dshi_1890 at 1968.462 kb on + strand, within Dshi_1890 at 1968.469 kb on - strand at 1968.500 kb on - strand at 1968.510 kb on - strand at 1968.515 kb on + strand at 1968.535 kb on + strand at 1968.620 kb on + strand at 1968.629 kb on + strand at 1968.644 kb on + strand at 1968.663 kb on - strand at 1968.722 kb on + strand at 1968.730 kb on - strand at 1968.732 kb on + strand at 1968.732 kb on + strand at 1968.750 kb on - strand at 1968.881 kb on + strand, within Dshi_1891 at 1968.883 kb on + strand, within Dshi_1891 at 1968.998 kb on + strand, within Dshi_1891 at 1969.046 kb on + strand, within Dshi_1891 at 1969.146 kb on - strand, within Dshi_1891 at 1969.174 kb on + strand at 1969.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,967,878 + Dshi_1890 0.38 -2.1 1,967,886 - Dshi_1890 0.38 +1.5 1,967,906 + Dshi_1890 0.40 -0.5 1,968,040 + Dshi_1890 0.52 -0.2 1,968,170 + Dshi_1890 0.64 +0.5 1,968,225 + Dshi_1890 0.69 -0.8 1,968,232 - Dshi_1890 0.69 +2.4 1,968,233 - Dshi_1890 0.69 +0.3 1,968,295 - Dshi_1890 0.75 +0.5 1,968,377 - Dshi_1890 0.82 +0.5 1,968,445 + Dshi_1890 0.88 +0.2 1,968,462 + Dshi_1890 0.90 -1.8 1,968,462 + Dshi_1890 0.90 -0.5 1,968,469 - +0.5 1,968,500 - -2.1 1,968,510 - -1.4 1,968,515 + -0.6 1,968,535 + -0.0 1,968,620 + +0.1 1,968,629 + -1.2 1,968,644 + +0.5 1,968,663 - +2.5 1,968,722 + +0.5 1,968,730 - -0.5 1,968,732 + -0.9 1,968,732 + +0.5 1,968,750 - -1.8 1,968,881 + Dshi_1891 0.24 +0.5 1,968,883 + Dshi_1891 0.24 -2.6 1,968,998 + Dshi_1891 0.51 -1.8 1,969,046 + Dshi_1891 0.62 -2.7 1,969,146 - Dshi_1891 0.86 +2.5 1,969,174 + +0.9 1,969,256 - +0.9
Or see this region's nucleotide sequence