Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1871
Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Fusidic 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,949,595 | + | -2.2 | |||
1,949,603 | - | -0.0 | |||
1,949,627 | - | -0.9 | |||
1,949,672 | + | Dshi_1870 | 0.11 | +0.5 | |
1,949,789 | - | Dshi_1870 | 0.23 | +0.5 | |
1,949,830 | - | Dshi_1870 | 0.28 | -0.4 | |
1,949,837 | - | Dshi_1870 | 0.28 | +0.9 | |
1,949,958 | - | Dshi_1870 | 0.41 | -1.4 | |
1,950,046 | + | Dshi_1870 | 0.51 | -0.5 | |
1,950,208 | + | Dshi_1870 | 0.68 | -0.2 | |
1,950,231 | + | Dshi_1870 | 0.71 | +0.5 | |
1,950,239 | - | Dshi_1870 | 0.72 | -0.5 | |
1,950,404 | - | Dshi_1870 | 0.90 | +1.1 | |
1,950,714 | - | Dshi_1871 | 0.21 | +0.5 | |
1,950,802 | + | Dshi_1871 | 0.35 | +1.4 | |
1,950,807 | + | Dshi_1871 | 0.36 | -1.9 | |
1,950,820 | - | Dshi_1871 | 0.38 | -1.5 | |
1,950,834 | - | Dshi_1871 | 0.40 | +0.5 | |
1,950,880 | - | Dshi_1871 | 0.47 | -0.7 | |
1,951,105 | + | Dshi_1871 | 0.82 | -1.2 | |
1,951,113 | - | Dshi_1871 | 0.83 | -1.3 | |
1,951,254 | + | +0.3 | |||
1,951,333 | + | +0.5 | |||
1,951,341 | - | -1.3 | |||
1,951,415 | + | -1.0 | |||
1,951,500 | + | -1.8 | |||
1,951,736 | + | Dshi_1872 | 0.28 | +2.5 | |
1,951,756 | - | Dshi_1872 | 0.30 | -1.9 | |
1,951,896 | + | Dshi_1872 | 0.41 | -2.2 | |
1,951,907 | + | Dshi_1872 | 0.42 | +0.5 | |
1,951,930 | - | Dshi_1872 | 0.44 | +1.7 |
Or see this region's nucleotide sequence