Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1818 and Dshi_1819 are separated by 100 nucleotides Dshi_1819 and Dshi_R0036 are separated by 158 nucleotides Dshi_R0036 and Dshi_1820 are separated by 100 nucleotides Dshi_1820 and Dshi_1821 overlap by 8 nucleotides
Dshi_1818: Dshi_1818 - hypothetical protein (RefSeq), at 1,896,712 to 1,896,984
_1818
Dshi_1819: Dshi_1819 - transcriptional regulator, LuxR family (RefSeq), at 1,897,085 to 1,897,816
_1819
Dshi_R0036: Dshi_R0036 - tRNA-Val (RefSeq), at 1,897,975 to 1,898,050
_R0036
Dshi_1820: Dshi_1820 - mannosyl-3-phosphoglycerate phosphatase family (RefSeq), at 1,898,151 to 1,898,933
_1820
Dshi_1821: Dshi_1821 - glycosyltransferase involved in cell wall biogenesis (RefSeq), at 1,898,926 to 1,900,176
_1821
Position (kb)
1897
1898
1899 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1897.153 kb on - strand at 1897.236 kb on + strand, within Dshi_1819 at 1897.244 kb on - strand, within Dshi_1819 at 1897.270 kb on - strand, within Dshi_1819 at 1897.270 kb on - strand, within Dshi_1819 at 1897.320 kb on + strand, within Dshi_1819 at 1897.445 kb on + strand, within Dshi_1819 at 1897.466 kb on + strand, within Dshi_1819 at 1897.474 kb on - strand, within Dshi_1819 at 1897.596 kb on + strand, within Dshi_1819 at 1897.673 kb on + strand, within Dshi_1819 at 1897.699 kb on + strand, within Dshi_1819 at 1897.717 kb on - strand, within Dshi_1819 at 1897.728 kb on - strand, within Dshi_1819 at 1897.728 kb on - strand, within Dshi_1819 at 1897.752 kb on + strand at 1898.113 kb on - strand at 1898.235 kb on - strand, within Dshi_1820 at 1898.235 kb on - strand, within Dshi_1820 at 1898.240 kb on - strand, within Dshi_1820 at 1898.272 kb on + strand, within Dshi_1820 at 1898.280 kb on - strand, within Dshi_1820 at 1898.295 kb on - strand, within Dshi_1820 at 1898.296 kb on - strand, within Dshi_1820 at 1898.333 kb on - strand, within Dshi_1820 at 1898.399 kb on + strand, within Dshi_1820 at 1898.689 kb on - strand, within Dshi_1820 at 1898.717 kb on + strand, within Dshi_1820 at 1898.771 kb on + strand, within Dshi_1820 at 1899.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,897,153 - +0.5 1,897,236 + Dshi_1819 0.21 +2.5 1,897,244 - Dshi_1819 0.22 +2.8 1,897,270 - Dshi_1819 0.25 -1.1 1,897,270 - Dshi_1819 0.25 +0.7 1,897,320 + Dshi_1819 0.32 +1.5 1,897,445 + Dshi_1819 0.49 -1.1 1,897,466 + Dshi_1819 0.52 -1.3 1,897,474 - Dshi_1819 0.53 -1.5 1,897,596 + Dshi_1819 0.70 +0.5 1,897,673 + Dshi_1819 0.80 -0.8 1,897,699 + Dshi_1819 0.84 -0.7 1,897,717 - Dshi_1819 0.86 +0.5 1,897,728 - Dshi_1819 0.88 +0.3 1,897,728 - Dshi_1819 0.88 -3.5 1,897,752 + -3.3 1,898,113 - +2.1 1,898,235 - Dshi_1820 0.11 -2.4 1,898,235 - Dshi_1820 0.11 -1.5 1,898,240 - Dshi_1820 0.11 +3.5 1,898,272 + Dshi_1820 0.15 +0.9 1,898,280 - Dshi_1820 0.16 +0.8 1,898,295 - Dshi_1820 0.18 -2.4 1,898,296 - Dshi_1820 0.19 -0.2 1,898,333 - Dshi_1820 0.23 -3.0 1,898,399 + Dshi_1820 0.32 -1.8 1,898,689 - Dshi_1820 0.69 +2.8 1,898,717 + Dshi_1820 0.72 -0.3 1,898,771 + Dshi_1820 0.79 -2.4 1,899,038 - +1.9
Or see this region's nucleotide sequence