Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1804

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1803 and Dshi_1804 are separated by 188 nucleotidesDshi_1804 and Dshi_1805 are separated by 108 nucleotides Dshi_1803: Dshi_1803 - transcriptional repressor, LexA family (RefSeq), at 1,875,043 to 1,875,738 _1803 Dshi_1804: Dshi_1804 - ComEC/Rec2-related protein (RefSeq), at 1,875,927 to 1,878,011 _1804 Dshi_1805: Dshi_1805 - glutamyl-tRNA synthetase (RefSeq), at 1,878,120 to 1,879,535 _1805 Position (kb) 1875 1876 1877 1878 1879Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1875.006 kb on + strandat 1875.794 kb on + strandat 1875.809 kb on + strandat 1875.917 kb on - strandat 1875.936 kb on - strandat 1876.085 kb on + strandat 1876.093 kb on - strandat 1876.171 kb on + strand, within Dshi_1804at 1876.477 kb on - strand, within Dshi_1804at 1876.842 kb on - strand, within Dshi_1804at 1876.842 kb on - strand, within Dshi_1804at 1876.891 kb on + strand, within Dshi_1804at 1876.899 kb on - strand, within Dshi_1804at 1876.899 kb on - strand, within Dshi_1804at 1876.938 kb on + strand, within Dshi_1804at 1876.957 kb on - strand, within Dshi_1804at 1877.052 kb on + strand, within Dshi_1804at 1877.075 kb on + strand, within Dshi_1804at 1877.221 kb on + strand, within Dshi_1804at 1877.376 kb on - strand, within Dshi_1804at 1877.423 kb on - strand, within Dshi_1804at 1877.462 kb on - strand, within Dshi_1804at 1877.823 kb on + strandat 1877.823 kb on + strandat 1877.891 kb on - strandat 1877.940 kb on - strandat 1877.950 kb on - strandat 1877.952 kb on + strandat 1877.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,875,006 + -1.9
1,875,794 + +0.4
1,875,809 + +0.4
1,875,917 - +2.0
1,875,936 - +4.1
1,876,085 + -0.9
1,876,093 - +0.4
1,876,171 + Dshi_1804 0.12 -0.6
1,876,477 - Dshi_1804 0.26 -3.8
1,876,842 - Dshi_1804 0.44 -0.6
1,876,842 - Dshi_1804 0.44 +0.4
1,876,891 + Dshi_1804 0.46 -2.1
1,876,899 - Dshi_1804 0.47 -1.1
1,876,899 - Dshi_1804 0.47 +0.4
1,876,938 + Dshi_1804 0.48 -1.9
1,876,957 - Dshi_1804 0.49 +1.4
1,877,052 + Dshi_1804 0.54 -0.9
1,877,075 + Dshi_1804 0.55 +0.2
1,877,221 + Dshi_1804 0.62 -2.1
1,877,376 - Dshi_1804 0.69 +0.4
1,877,423 - Dshi_1804 0.72 +0.2
1,877,462 - Dshi_1804 0.74 -0.1
1,877,823 + -0.2
1,877,823 + -0.7
1,877,891 - -0.6
1,877,940 - +0.4
1,877,950 - -1.1
1,877,952 + -1.3
1,877,952 + -2.4

Or see this region's nucleotide sequence