Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1720

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1719 and Dshi_1720 overlap by 8 nucleotidesDshi_1720 and Dshi_1721 are separated by 111 nucleotidesDshi_1721 and Dshi_1722 are separated by 39 nucleotides Dshi_1719: Dshi_1719 - fatty acid/phospholipid synthesis protein PlsX (RefSeq), at 1,786,088 to 1,787,245 _1719 Dshi_1720: Dshi_1720 - 3-oxoacyl-(acyl-carrier-protein) synthase III (RefSeq), at 1,787,238 to 1,788,212 _1720 Dshi_1721: Dshi_1721 - integration host factor, alpha subunit (RefSeq), at 1,788,324 to 1,788,629 _1721 Dshi_1722: Dshi_1722 - transcriptional regulator, MerR family (RefSeq), at 1,788,669 to 1,789,406 _1722 Position (kb) 1787 1788 1789Strain fitness (log2 ratio) -1 0 1at 1788.778 kb on - strand, within Dshi_1722at 1789.177 kb on + strand, within Dshi_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,788,778 - Dshi_1722 0.15 -0.6
1,789,177 + Dshi_1722 0.69 +0.4

Or see this region's nucleotide sequence