Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1650 and Dshi_1651 are separated by 17 nucleotides Dshi_1651 and Dshi_1652 are separated by 72 nucleotides
Dshi_1650: Dshi_1650 - glucose/maltose/trehalose/sucrose ABC transporter, permease component 2 (from data) , at 1,714,954 to 1,716,111
_1650
Dshi_1651: Dshi_1651 - glucose/maltose/trehalose/sucrose ABC transporter, permease component 1 (from data) , at 1,716,129 to 1,717,133
_1651
Dshi_1652: Dshi_1652 - glucose/maltose/trehalose/sucrose ABC transporter, substrate-binding component (from data) , at 1,717,206 to 1,718,564
_1652
Position (kb)
1716
1717
1718 Strain fitness (log2 ratio)
-1
0
1
2 at 1715.171 kb on + strand, within Dshi_1650 at 1715.215 kb on + strand, within Dshi_1650 at 1715.223 kb on - strand, within Dshi_1650 at 1715.314 kb on - strand, within Dshi_1650 at 1715.570 kb on - strand, within Dshi_1650 at 1715.649 kb on - strand, within Dshi_1650 at 1715.734 kb on + strand, within Dshi_1650 at 1715.752 kb on - strand, within Dshi_1650 at 1715.988 kb on - strand, within Dshi_1650 at 1716.005 kb on + strand at 1716.069 kb on - strand at 1716.071 kb on + strand at 1716.071 kb on + strand at 1716.079 kb on - strand at 1716.128 kb on - strand at 1716.197 kb on + strand at 1716.205 kb on - strand at 1716.215 kb on - strand at 1716.324 kb on + strand, within Dshi_1651 at 1716.326 kb on + strand, within Dshi_1651 at 1716.379 kb on + strand, within Dshi_1651 at 1716.682 kb on + strand, within Dshi_1651 at 1716.749 kb on + strand, within Dshi_1651 at 1716.944 kb on - strand, within Dshi_1651 at 1717.053 kb on - strand at 1717.081 kb on - strand at 1717.123 kb on + strand at 1717.294 kb on - strand at 1717.328 kb on + strand at 1717.370 kb on - strand, within Dshi_1652 at 1717.560 kb on + strand, within Dshi_1652 at 1717.813 kb on + strand, within Dshi_1652 at 1717.945 kb on + strand, within Dshi_1652 at 1718.036 kb on - strand, within Dshi_1652
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,715,171 + Dshi_1650 0.19 +0.7 1,715,215 + Dshi_1650 0.23 +0.9 1,715,223 - Dshi_1650 0.23 +1.2 1,715,314 - Dshi_1650 0.31 +1.2 1,715,570 - Dshi_1650 0.53 +1.7 1,715,649 - Dshi_1650 0.60 +0.9 1,715,734 + Dshi_1650 0.67 +0.9 1,715,752 - Dshi_1650 0.69 +0.9 1,715,988 - Dshi_1650 0.89 +0.3 1,716,005 + +0.3 1,716,069 - -0.3 1,716,071 + +0.2 1,716,071 + +1.0 1,716,079 - +2.1 1,716,128 - +0.5 1,716,197 + +1.2 1,716,205 - +1.0 1,716,215 - -0.6 1,716,324 + Dshi_1651 0.19 +1.2 1,716,326 + Dshi_1651 0.20 +0.7 1,716,379 + Dshi_1651 0.25 +1.8 1,716,682 + Dshi_1651 0.55 +0.9 1,716,749 + Dshi_1651 0.62 +0.7 1,716,944 - Dshi_1651 0.81 +1.4 1,717,053 - +0.7 1,717,081 - +1.5 1,717,123 + +1.2 1,717,294 - +1.8 1,717,328 + +0.6 1,717,370 - Dshi_1652 0.12 -0.1 1,717,560 + Dshi_1652 0.26 +0.9 1,717,813 + Dshi_1652 0.45 +2.0 1,717,945 + Dshi_1652 0.54 +0.7 1,718,036 - Dshi_1652 0.61 +0.8
Or see this region's nucleotide sequence