Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1651

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1650 and Dshi_1651 are separated by 17 nucleotidesDshi_1651 and Dshi_1652 are separated by 72 nucleotides Dshi_1650: Dshi_1650 - glucose/maltose/trehalose/sucrose ABC transporter, permease component 2 (from data), at 1,714,954 to 1,716,111 _1650 Dshi_1651: Dshi_1651 - glucose/maltose/trehalose/sucrose ABC transporter, permease component 1 (from data), at 1,716,129 to 1,717,133 _1651 Dshi_1652: Dshi_1652 - glucose/maltose/trehalose/sucrose ABC transporter, substrate-binding component (from data), at 1,717,206 to 1,718,564 _1652 Position (kb) 1716 1717 1718Strain fitness (log2 ratio) -1 0 1 2at 1715.171 kb on + strand, within Dshi_1650at 1715.215 kb on + strand, within Dshi_1650at 1715.223 kb on - strand, within Dshi_1650at 1715.314 kb on - strand, within Dshi_1650at 1715.570 kb on - strand, within Dshi_1650at 1715.649 kb on - strand, within Dshi_1650at 1715.734 kb on + strand, within Dshi_1650at 1715.752 kb on - strand, within Dshi_1650at 1715.988 kb on - strand, within Dshi_1650at 1716.005 kb on + strandat 1716.069 kb on - strandat 1716.071 kb on + strandat 1716.071 kb on + strandat 1716.079 kb on - strandat 1716.128 kb on - strandat 1716.197 kb on + strandat 1716.205 kb on - strandat 1716.215 kb on - strandat 1716.324 kb on + strand, within Dshi_1651at 1716.326 kb on + strand, within Dshi_1651at 1716.379 kb on + strand, within Dshi_1651at 1716.682 kb on + strand, within Dshi_1651at 1716.749 kb on + strand, within Dshi_1651at 1716.944 kb on - strand, within Dshi_1651at 1717.053 kb on - strandat 1717.081 kb on - strandat 1717.123 kb on + strandat 1717.294 kb on - strandat 1717.328 kb on + strandat 1717.370 kb on - strand, within Dshi_1652at 1717.560 kb on + strand, within Dshi_1652at 1717.813 kb on + strand, within Dshi_1652at 1717.945 kb on + strand, within Dshi_1652at 1718.036 kb on - strand, within Dshi_1652

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,715,171 + Dshi_1650 0.19 +0.7
1,715,215 + Dshi_1650 0.23 +0.9
1,715,223 - Dshi_1650 0.23 +1.2
1,715,314 - Dshi_1650 0.31 +1.2
1,715,570 - Dshi_1650 0.53 +1.7
1,715,649 - Dshi_1650 0.60 +0.9
1,715,734 + Dshi_1650 0.67 +0.9
1,715,752 - Dshi_1650 0.69 +0.9
1,715,988 - Dshi_1650 0.89 +0.3
1,716,005 + +0.3
1,716,069 - -0.3
1,716,071 + +0.2
1,716,071 + +1.0
1,716,079 - +2.1
1,716,128 - +0.5
1,716,197 + +1.2
1,716,205 - +1.0
1,716,215 - -0.6
1,716,324 + Dshi_1651 0.19 +1.2
1,716,326 + Dshi_1651 0.20 +0.7
1,716,379 + Dshi_1651 0.25 +1.8
1,716,682 + Dshi_1651 0.55 +0.9
1,716,749 + Dshi_1651 0.62 +0.7
1,716,944 - Dshi_1651 0.81 +1.4
1,717,053 - +0.7
1,717,081 - +1.5
1,717,123 + +1.2
1,717,294 - +1.8
1,717,328 + +0.6
1,717,370 - Dshi_1652 0.12 -0.1
1,717,560 + Dshi_1652 0.26 +0.9
1,717,813 + Dshi_1652 0.45 +2.0
1,717,945 + Dshi_1652 0.54 +0.7
1,718,036 - Dshi_1652 0.61 +0.8

Or see this region's nucleotide sequence