Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1598 and Dshi_1599 overlap by 4 nucleotides Dshi_1599 and Dshi_1600 are separated by 115 nucleotides Dshi_1600 and Dshi_1601 are separated by 146 nucleotides Dshi_1601 and Dshi_1602 are separated by 4 nucleotides
Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726
_1598
Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604
_1599
Dshi_1600: Dshi_1600 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,665,720 to 1,666,031
_1600
Dshi_1601: Dshi_1601 - ribosomal protein S9 (RefSeq), at 1,666,178 to 1,666,672
_1601
Dshi_1602: Dshi_1602 - ribosomal protein L13 (RefSeq), at 1,666,677 to 1,667,135
_1602
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-2
-1
0
1 at 1664.910 kb on - strand, within Dshi_1599 at 1665.037 kb on - strand, within Dshi_1599 at 1665.337 kb on + strand, within Dshi_1599 at 1665.344 kb on + strand, within Dshi_1599 at 1665.409 kb on - strand, within Dshi_1599 at 1665.643 kb on + strand at 1665.798 kb on + strand, within Dshi_1600 at 1665.932 kb on + strand, within Dshi_1600 at 1666.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,664,910 - Dshi_1599 0.21 +0.2 1,665,037 - Dshi_1599 0.36 -2.4 1,665,337 + Dshi_1599 0.70 -0.7 1,665,344 + Dshi_1599 0.70 -0.2 1,665,409 - Dshi_1599 0.78 -1.5 1,665,643 + -1.5 1,665,798 + Dshi_1600 0.25 -0.2 1,665,932 + Dshi_1600 0.68 +0.2 1,666,021 - -0.8
Or see this region's nucleotide sequence