Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1598

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1597 and Dshi_1598 overlap by 4 nucleotidesDshi_1598 and Dshi_1599 overlap by 4 nucleotidesDshi_1599 and Dshi_1600 are separated by 115 nucleotides Dshi_1597: Dshi_1597 - ABC transporter related (RefSeq), at 1,662,856 to 1,663,923 _1597 Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726 _1598 Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604 _1599 Dshi_1600: Dshi_1600 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,665,720 to 1,666,031 _1600 Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -2 -1 0 1 2at 1662.935 kb on + strandat 1663.045 kb on - strand, within Dshi_1597at 1663.146 kb on - strand, within Dshi_1597at 1663.324 kb on + strand, within Dshi_1597at 1663.444 kb on - strand, within Dshi_1597at 1663.511 kb on - strand, within Dshi_1597at 1663.602 kb on + strand, within Dshi_1597at 1663.610 kb on - strand, within Dshi_1597at 1663.818 kb on - strandat 1663.914 kb on - strandat 1664.096 kb on + strand, within Dshi_1598at 1664.579 kb on + strand, within Dshi_1598at 1664.684 kb on - strandat 1664.910 kb on - strand, within Dshi_1599at 1665.037 kb on - strand, within Dshi_1599at 1665.337 kb on + strand, within Dshi_1599at 1665.344 kb on + strand, within Dshi_1599at 1665.409 kb on - strand, within Dshi_1599at 1665.643 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,662,935 + -1.7
1,663,045 - Dshi_1597 0.18 -1.7
1,663,146 - Dshi_1597 0.27 +1.0
1,663,324 + Dshi_1597 0.44 -0.0
1,663,444 - Dshi_1597 0.55 +2.1
1,663,511 - Dshi_1597 0.61 +1.7
1,663,602 + Dshi_1597 0.70 -2.0
1,663,610 - Dshi_1597 0.71 +0.4
1,663,818 - -0.3
1,663,914 - -0.2
1,664,096 + Dshi_1598 0.22 +0.1
1,664,579 + Dshi_1598 0.82 -1.9
1,664,684 - +0.1
1,664,910 - Dshi_1599 0.21 +0.2
1,665,037 - Dshi_1599 0.36 -2.4
1,665,337 + Dshi_1599 0.70 -0.7
1,665,344 + Dshi_1599 0.70 -0.2
1,665,409 - Dshi_1599 0.78 -1.5
1,665,643 + -1.5

Or see this region's nucleotide sequence