Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1592 and Dshi_1593 are separated by 35 nucleotides Dshi_1593 and Dshi_1594 overlap by 26 nucleotides Dshi_1594 and Dshi_1595 are separated by 81 nucleotides Dshi_1595 and Dshi_1596 overlap by 8 nucleotides
Dshi_1592: Dshi_1592 - hypothetical protein (RefSeq), at 1,658,518 to 1,659,390
_1592
Dshi_1593: Dshi_1593 - Homoserine O-succinyltransferase (RefSeq), at 1,659,426 to 1,660,343
_1593
Dshi_1594: Dshi_1594 - alpha/beta hydrolase fold (RefSeq), at 1,660,318 to 1,661,280
_1594
Dshi_1595: Dshi_1595 - protein of unknown function DUF344 (RefSeq), at 1,661,362 to 1,662,231
_1595
Dshi_1596: Dshi_1596 - transcriptional regulator, TetR family (RefSeq), at 1,662,224 to 1,662,841
_1596
Position (kb)
1660
1661
1662 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1660.446 kb on + strand, within Dshi_1594 at 1660.606 kb on + strand, within Dshi_1594 at 1660.741 kb on + strand, within Dshi_1594 at 1660.831 kb on + strand, within Dshi_1594 at 1660.935 kb on + strand, within Dshi_1594 at 1661.002 kb on + strand, within Dshi_1594 at 1661.002 kb on + strand, within Dshi_1594 at 1661.010 kb on - strand, within Dshi_1594 at 1661.031 kb on - strand, within Dshi_1594 at 1661.195 kb on - strand at 1661.324 kb on + strand at 1661.333 kb on + strand at 1661.341 kb on + strand at 1661.349 kb on - strand at 1661.516 kb on + strand, within Dshi_1595 at 1661.556 kb on - strand, within Dshi_1595 at 1661.628 kb on + strand, within Dshi_1595 at 1661.628 kb on + strand, within Dshi_1595 at 1661.656 kb on - strand, within Dshi_1595 at 1661.690 kb on - strand, within Dshi_1595 at 1661.896 kb on - strand, within Dshi_1595 at 1662.146 kb on - strand at 1662.172 kb on - strand at 1662.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,660,446 + Dshi_1594 0.13 +1.6 1,660,606 + Dshi_1594 0.30 +1.4 1,660,741 + Dshi_1594 0.44 -1.7 1,660,831 + Dshi_1594 0.53 +1.4 1,660,935 + Dshi_1594 0.64 -3.2 1,661,002 + Dshi_1594 0.71 +1.7 1,661,002 + Dshi_1594 0.71 -0.2 1,661,010 - Dshi_1594 0.72 +0.3 1,661,031 - Dshi_1594 0.74 +0.7 1,661,195 - -2.5 1,661,324 + +1.4 1,661,333 + +0.9 1,661,341 + +0.2 1,661,349 - -2.1 1,661,516 + Dshi_1595 0.18 -1.1 1,661,556 - Dshi_1595 0.22 -0.6 1,661,628 + Dshi_1595 0.31 +0.8 1,661,628 + Dshi_1595 0.31 +0.7 1,661,656 - Dshi_1595 0.34 -0.4 1,661,690 - Dshi_1595 0.38 -0.5 1,661,896 - Dshi_1595 0.61 -1.7 1,662,146 - +1.3 1,662,172 - -0.5 1,662,206 - +0.1
Or see this region's nucleotide sequence