Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1554

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1552 and Dshi_1553 overlap by 4 nucleotidesDshi_1553 and Dshi_1554 overlap by 4 nucleotidesDshi_1554 and Dshi_1555 are separated by 69 nucleotidesDshi_1555 and Dshi_1556 are separated by 18 nucleotides Dshi_1552: Dshi_1552 - type III effector Hrp-dependent outers (RefSeq), at 1,614,497 to 1,615,753 _1552 Dshi_1553: Dshi_1553 - class II aldolase/adducin family protein (RefSeq), at 1,615,750 to 1,616,400 _1553 Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161 _1554 Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857 _1555 Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435 _1556 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1615.404 kb on - strand, within Dshi_1552at 1615.422 kb on - strand, within Dshi_1552at 1615.746 kb on + strandat 1615.762 kb on - strandat 1616.163 kb on + strand, within Dshi_1553at 1616.185 kb on + strand, within Dshi_1553at 1616.204 kb on + strand, within Dshi_1553at 1616.386 kb on + strandat 1616.827 kb on - strand, within Dshi_1554at 1616.863 kb on - strand, within Dshi_1554at 1617.043 kb on + strand, within Dshi_1554at 1617.373 kb on + strand, within Dshi_1555at 1617.496 kb on - strand, within Dshi_1555at 1617.647 kb on + strand, within Dshi_1555at 1617.689 kb on + strand, within Dshi_1555at 1617.703 kb on + strand, within Dshi_1555at 1617.711 kb on - strand, within Dshi_1555at 1617.711 kb on - strand, within Dshi_1555at 1617.733 kb on - strand, within Dshi_1555at 1617.886 kb on + strandat 1617.940 kb on + strandat 1617.984 kb on + strandat 1617.990 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,615,404 - Dshi_1552 0.72 -1.1
1,615,422 - Dshi_1552 0.74 +1.8
1,615,746 + -1.2
1,615,762 - -4.0
1,616,163 + Dshi_1553 0.63 +0.2
1,616,185 + Dshi_1553 0.67 -0.0
1,616,204 + Dshi_1553 0.70 -2.1
1,616,386 + -3.2
1,616,827 - Dshi_1554 0.56 +0.6
1,616,863 - Dshi_1554 0.61 +3.4
1,617,043 + Dshi_1554 0.84 -3.3
1,617,373 + Dshi_1555 0.23 -0.3
1,617,496 - Dshi_1555 0.42 -0.4
1,617,647 + Dshi_1555 0.66 +0.1
1,617,689 + Dshi_1555 0.73 -0.8
1,617,703 + Dshi_1555 0.75 -2.5
1,617,711 - Dshi_1555 0.77 -1.1
1,617,711 - Dshi_1555 0.77 -0.7
1,617,733 - Dshi_1555 0.80 +0.5
1,617,886 + -0.8
1,617,940 + +0.1
1,617,984 + -1.8
1,617,990 + +0.2

Or see this region's nucleotide sequence