Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1505

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1504 and Dshi_1505 overlap by 4 nucleotidesDshi_1505 and Dshi_1506 are separated by 169 nucleotides Dshi_1504: Dshi_1504 - lipid-A-disaccharide synthase (RefSeq), at 1,563,814 to 1,564,956 _1504 Dshi_1505: Dshi_1505 - hypothetical protein (RefSeq), at 1,564,953 to 1,566,149 _1505 Dshi_1506: Dshi_1506 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 1,566,319 to 1,567,473 _1506 Position (kb) 1564 1565 1566 1567Strain fitness (log2 ratio) -2 -1 0 1 2at 1565.025 kb on - strandat 1565.116 kb on + strand, within Dshi_1505at 1565.148 kb on + strand, within Dshi_1505at 1565.287 kb on - strand, within Dshi_1505at 1565.305 kb on - strand, within Dshi_1505at 1565.353 kb on - strand, within Dshi_1505at 1565.504 kb on + strand, within Dshi_1505at 1565.579 kb on - strand, within Dshi_1505at 1565.863 kb on + strand, within Dshi_1505at 1566.024 kb on - strand, within Dshi_1505at 1566.030 kb on - strandat 1566.048 kb on - strandat 1566.094 kb on + strandat 1566.097 kb on + strandat 1566.138 kb on - strandat 1566.172 kb on - strandat 1566.265 kb on - strandat 1566.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,565,025 - -1.7
1,565,116 + Dshi_1505 0.14 -2.4
1,565,148 + Dshi_1505 0.16 -0.4
1,565,287 - Dshi_1505 0.28 +0.3
1,565,305 - Dshi_1505 0.29 -2.5
1,565,353 - Dshi_1505 0.33 -0.2
1,565,504 + Dshi_1505 0.46 -0.5
1,565,579 - Dshi_1505 0.52 +0.3
1,565,863 + Dshi_1505 0.76 -2.4
1,566,024 - Dshi_1505 0.89 -0.3
1,566,030 - -1.4
1,566,048 - -1.5
1,566,094 + -2.1
1,566,097 + -1.0
1,566,138 - -1.1
1,566,172 - -1.4
1,566,265 - +2.6
1,566,273 + +0.3

Or see this region's nucleotide sequence