Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1492

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1491 and Dshi_1492 are separated by 58 nucleotidesDshi_1492 and Dshi_1493 are separated by 109 nucleotidesDshi_1493 and Dshi_1494 are separated by 130 nucleotides Dshi_1491: Dshi_1491 - transcriptional regulator, AraC family (RefSeq), at 1,550,866 to 1,551,678 _1491 Dshi_1492: Dshi_1492 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 1,551,737 to 1,552,627 _1492 Dshi_1493: Dshi_1493 - uridylate kinase (RefSeq), at 1,552,737 to 1,553,468 _1493 Dshi_1494: Dshi_1494 - ribosome recycling factor (RefSeq), at 1,553,599 to 1,554,165 _1494 Position (kb) 1551 1552 1553Strain fitness (log2 ratio) -3 -2 -1 0 1at 1550.824 kb on - strandat 1551.082 kb on + strand, within Dshi_1491at 1551.124 kb on - strand, within Dshi_1491at 1551.248 kb on - strand, within Dshi_1491at 1551.262 kb on + strand, within Dshi_1491at 1551.274 kb on + strand, within Dshi_1491at 1551.616 kb on + strandat 1551.625 kb on - strandat 1551.716 kb on - strandat 1553.462 kb on + strandat 1553.500 kb on + strandat 1553.500 kb on + strandat 1553.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,550,824 - +0.3
1,551,082 + Dshi_1491 0.27 +0.3
1,551,124 - Dshi_1491 0.32 -1.3
1,551,248 - Dshi_1491 0.47 -0.7
1,551,262 + Dshi_1491 0.49 -1.2
1,551,274 + Dshi_1491 0.50 -3.5
1,551,616 + +0.3
1,551,625 - +0.3
1,551,716 - -1.0
1,553,462 + +1.5
1,553,500 + -2.0
1,553,500 + -1.6
1,553,532 - -1.0

Or see this region's nucleotide sequence