Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1400 and Dshi_1401 are separated by 11 nucleotides Dshi_1401 and Dshi_1402 are separated by 12 nucleotides
Dshi_1400: Dshi_1400 - ABC transporter related (RefSeq), at 1,453,619 to 1,454,374
_1400
Dshi_1401: Dshi_1401 - ABC transporter related (RefSeq), at 1,454,386 to 1,455,144
_1401
Dshi_1402: Dshi_1402 - inner-membrane translocator (RefSeq), at 1,455,157 to 1,456,365
_1402
Position (kb)
1454
1455
1456 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1453.390 kb on - strand at 1453.406 kb on + strand at 1453.541 kb on - strand at 1453.645 kb on + strand at 1453.687 kb on + strand at 1453.796 kb on + strand, within Dshi_1400 at 1453.842 kb on + strand, within Dshi_1400 at 1453.861 kb on - strand, within Dshi_1400 at 1453.937 kb on - strand, within Dshi_1400 at 1453.991 kb on + strand, within Dshi_1400 at 1454.027 kb on + strand, within Dshi_1400 at 1454.195 kb on + strand, within Dshi_1400 at 1454.196 kb on + strand, within Dshi_1400 at 1454.224 kb on - strand, within Dshi_1400 at 1454.271 kb on + strand, within Dshi_1400 at 1454.354 kb on - strand at 1454.479 kb on - strand, within Dshi_1401 at 1454.616 kb on + strand, within Dshi_1401 at 1454.677 kb on - strand, within Dshi_1401 at 1454.816 kb on - strand, within Dshi_1401 at 1455.005 kb on - strand, within Dshi_1401 at 1455.010 kb on - strand, within Dshi_1401 at 1455.091 kb on + strand at 1455.147 kb on - strand at 1455.285 kb on + strand, within Dshi_1402 at 1455.404 kb on - strand, within Dshi_1402 at 1455.451 kb on + strand, within Dshi_1402 at 1455.459 kb on - strand, within Dshi_1402 at 1455.521 kb on + strand, within Dshi_1402 at 1455.582 kb on + strand, within Dshi_1402 at 1455.586 kb on + strand, within Dshi_1402 at 1455.911 kb on + strand, within Dshi_1402 at 1455.946 kb on + strand, within Dshi_1402 at 1455.946 kb on + strand, within Dshi_1402 at 1455.968 kb on + strand, within Dshi_1402
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,453,390 - -1.5 1,453,406 + -0.8 1,453,541 - -0.4 1,453,645 + +0.9 1,453,687 + -0.6 1,453,796 + Dshi_1400 0.23 -1.3 1,453,842 + Dshi_1400 0.29 -1.3 1,453,861 - Dshi_1400 0.32 -1.2 1,453,937 - Dshi_1400 0.42 -1.0 1,453,991 + Dshi_1400 0.49 -1.0 1,454,027 + Dshi_1400 0.54 +0.7 1,454,195 + Dshi_1400 0.76 +3.2 1,454,196 + Dshi_1400 0.76 -0.4 1,454,224 - Dshi_1400 0.80 -1.0 1,454,271 + Dshi_1400 0.86 -3.4 1,454,354 - +0.0 1,454,479 - Dshi_1401 0.12 +1.5 1,454,616 + Dshi_1401 0.30 +1.5 1,454,677 - Dshi_1401 0.38 +0.1 1,454,816 - Dshi_1401 0.57 +1.2 1,455,005 - Dshi_1401 0.82 +1.0 1,455,010 - Dshi_1401 0.82 -2.9 1,455,091 + -0.6 1,455,147 - +2.2 1,455,285 + Dshi_1402 0.11 +0.1 1,455,404 - Dshi_1402 0.20 -2.7 1,455,451 + Dshi_1402 0.24 -0.1 1,455,459 - Dshi_1402 0.25 +1.3 1,455,521 + Dshi_1402 0.30 -0.3 1,455,582 + Dshi_1402 0.35 -0.6 1,455,586 + Dshi_1402 0.35 -1.6 1,455,911 + Dshi_1402 0.62 -2.3 1,455,946 + Dshi_1402 0.65 -1.7 1,455,946 + Dshi_1402 0.65 +3.0 1,455,968 + Dshi_1402 0.67 -0.9
Or see this region's nucleotide sequence