Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1358 and Dshi_1359 are separated by 148 nucleotides Dshi_1359 and Dshi_1360 overlap by 12 nucleotides Dshi_1360 and Dshi_1361 are separated by 106 nucleotides
Dshi_1358: Dshi_1358 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,410,984 to 1,411,760
_1358
Dshi_1359: Dshi_1359 - protein of unknown function DUF35 (RefSeq), at 1,411,909 to 1,412,286
_1359
Dshi_1360: Dshi_1360 - protein of unknown function DUF1486 (RefSeq), at 1,412,275 to 1,413,312
_1360
Dshi_1361: Dshi_1361 - D-lactate dehydrogenase (cytochrome) (RefSeq), at 1,413,419 to 1,414,825
_1361
Position (kb)
1412
1413
1414 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1411.357 kb on - strand, within Dshi_1358 at 1411.366 kb on - strand, within Dshi_1358 at 1411.498 kb on - strand, within Dshi_1358 at 1411.498 kb on - strand, within Dshi_1358 at 1411.630 kb on - strand, within Dshi_1358 at 1411.642 kb on + strand, within Dshi_1358 at 1411.765 kb on - strand at 1411.857 kb on + strand at 1412.126 kb on + strand, within Dshi_1359 at 1412.184 kb on - strand, within Dshi_1359 at 1412.443 kb on - strand, within Dshi_1360 at 1412.496 kb on - strand, within Dshi_1360 at 1412.550 kb on + strand, within Dshi_1360 at 1412.709 kb on - strand, within Dshi_1360 at 1412.709 kb on - strand, within Dshi_1360 at 1412.798 kb on - strand, within Dshi_1360 at 1412.813 kb on - strand, within Dshi_1360 at 1412.950 kb on + strand, within Dshi_1360 at 1413.267 kb on + strand at 1413.502 kb on + strand at 1413.513 kb on + strand at 1413.516 kb on - strand at 1413.516 kb on - strand at 1414.079 kb on - strand, within Dshi_1361 at 1414.216 kb on - strand, within Dshi_1361 at 1414.284 kb on + strand, within Dshi_1361
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,411,357 - Dshi_1358 0.48 +2.4 1,411,366 - Dshi_1358 0.49 -1.8 1,411,498 - Dshi_1358 0.66 -0.9 1,411,498 - Dshi_1358 0.66 -1.2 1,411,630 - Dshi_1358 0.83 +0.4 1,411,642 + Dshi_1358 0.85 +0.6 1,411,765 - -1.1 1,411,857 + -1.4 1,412,126 + Dshi_1359 0.57 -0.9 1,412,184 - Dshi_1359 0.73 +0.7 1,412,443 - Dshi_1360 0.16 -0.6 1,412,496 - Dshi_1360 0.21 -1.4 1,412,550 + Dshi_1360 0.26 -2.4 1,412,709 - Dshi_1360 0.42 +0.5 1,412,709 - Dshi_1360 0.42 +3.0 1,412,798 - Dshi_1360 0.50 +0.4 1,412,813 - Dshi_1360 0.52 +0.2 1,412,950 + Dshi_1360 0.65 +0.4 1,413,267 + +0.0 1,413,502 + +0.4 1,413,513 + -1.3 1,413,516 - -0.9 1,413,516 - -1.1 1,414,079 - Dshi_1361 0.47 -1.7 1,414,216 - Dshi_1361 0.57 -1.0 1,414,284 + Dshi_1361 0.61 -0.5
Or see this region's nucleotide sequence