Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1284

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1283 and Dshi_1284 are separated by 58 nucleotidesDshi_1284 and Dshi_1285 overlap by 4 nucleotides Dshi_1283: Dshi_1283 - Formate--tetrahydrofolate ligase (RefSeq), at 1,335,512 to 1,337,179 _1283 Dshi_1284: Dshi_1284 - chorismate mutase related enzyme (RefSeq), at 1,337,238 to 1,337,558 _1284 Dshi_1285: Dshi_1285 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) (RefSeq), at 1,337,555 to 1,338,454 _1285 Position (kb) 1337 1338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1336.487 kb on + strand, within Dshi_1283at 1336.877 kb on - strand, within Dshi_1283at 1336.941 kb on + strand, within Dshi_1283at 1336.942 kb on - strand, within Dshi_1283at 1336.966 kb on + strand, within Dshi_1283at 1337.088 kb on - strandat 1338.518 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,336,487 + Dshi_1283 0.58 +2.2
1,336,877 - Dshi_1283 0.82 -2.4
1,336,941 + Dshi_1283 0.86 -1.1
1,336,942 - Dshi_1283 0.86 +0.5
1,336,966 + Dshi_1283 0.87 -2.8
1,337,088 - -2.8
1,338,518 + -1.3

Or see this region's nucleotide sequence