Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1197 and Dshi_1198 are separated by 48 nucleotides Dshi_1198 and Dshi_1199 are separated by 152 nucleotides Dshi_1199 and Dshi_1200 are separated by 2 nucleotides
Dshi_1197: Dshi_1197 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,237,047 to 1,238,915
_1197
Dshi_1198: Dshi_1198 - beta-lactamase (RefSeq), at 1,238,964 to 1,239,965
_1198
Dshi_1199: Dshi_1199 - Inositol-phosphate phosphatase (RefSeq), at 1,240,118 to 1,240,912
_1199
Dshi_1200: Dshi_1200 - Rhomboid family protein (RefSeq), at 1,240,915 to 1,241,691
_1200
Position (kb)
1238
1239
1240 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1238.049 kb on + strand, within Dshi_1197 at 1238.122 kb on + strand, within Dshi_1197 at 1238.130 kb on - strand, within Dshi_1197 at 1238.203 kb on + strand, within Dshi_1197 at 1238.274 kb on + strand, within Dshi_1197 at 1238.274 kb on + strand, within Dshi_1197 at 1238.344 kb on - strand, within Dshi_1197 at 1238.500 kb on + strand, within Dshi_1197 at 1238.561 kb on - strand, within Dshi_1197 at 1238.721 kb on + strand, within Dshi_1197 at 1238.765 kb on - strand at 1238.772 kb on - strand at 1238.780 kb on - strand at 1239.047 kb on - strand at 1239.101 kb on + strand, within Dshi_1198 at 1239.110 kb on - strand, within Dshi_1198 at 1239.209 kb on + strand, within Dshi_1198 at 1239.252 kb on + strand, within Dshi_1198 at 1239.286 kb on - strand, within Dshi_1198 at 1239.435 kb on - strand, within Dshi_1198 at 1239.521 kb on + strand, within Dshi_1198 at 1239.524 kb on - strand, within Dshi_1198 at 1240.014 kb on - strand at 1240.025 kb on - strand at 1240.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,238,049 + Dshi_1197 0.54 +1.6 1,238,122 + Dshi_1197 0.58 -0.4 1,238,130 - Dshi_1197 0.58 +0.1 1,238,203 + Dshi_1197 0.62 +1.6 1,238,274 + Dshi_1197 0.66 -2.1 1,238,274 + Dshi_1197 0.66 +0.6 1,238,344 - Dshi_1197 0.69 +1.6 1,238,500 + Dshi_1197 0.78 +0.6 1,238,561 - Dshi_1197 0.81 +1.6 1,238,721 + Dshi_1197 0.90 +2.6 1,238,765 - +0.4 1,238,772 - -1.4 1,238,780 - +0.6 1,239,047 - +1.8 1,239,101 + Dshi_1198 0.14 -0.1 1,239,110 - Dshi_1198 0.15 +1.6 1,239,209 + Dshi_1198 0.24 -1.6 1,239,252 + Dshi_1198 0.29 -1.4 1,239,286 - Dshi_1198 0.32 -1.1 1,239,435 - Dshi_1198 0.47 -1.6 1,239,521 + Dshi_1198 0.56 +0.6 1,239,524 - Dshi_1198 0.56 -0.4 1,240,014 - -1.4 1,240,025 - -1.0 1,240,956 + -1.1
Or see this region's nucleotide sequence