Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1124 and Dshi_1125 are separated by 4 nucleotides Dshi_1125 and Dshi_1126 are separated by 2 nucleotides Dshi_1126 and Dshi_1127 are separated by 19 nucleotides
Dshi_1124: Dshi_1124 - type II secretion system protein (RefSeq), at 1,149,478 to 1,150,473
_1124
Dshi_1125: Dshi_1125 - type II secretion system protein (RefSeq), at 1,150,478 to 1,151,446
_1125
Dshi_1126: Dshi_1126 - type II secretion system protein E (RefSeq), at 1,151,449 to 1,152,903
_1126
Dshi_1127: Dshi_1127 - response regulator receiver protein (RefSeq), at 1,152,923 to 1,154,230
_1127
Position (kb)
1151
1152
1153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1150.483 kb on - strand at 1150.582 kb on - strand, within Dshi_1125 at 1150.587 kb on + strand, within Dshi_1125 at 1150.608 kb on - strand, within Dshi_1125 at 1150.651 kb on + strand, within Dshi_1125 at 1150.713 kb on + strand, within Dshi_1125 at 1150.740 kb on - strand, within Dshi_1125 at 1150.925 kb on + strand, within Dshi_1125 at 1150.978 kb on + strand, within Dshi_1125 at 1150.978 kb on + strand, within Dshi_1125 at 1151.053 kb on - strand, within Dshi_1125 at 1151.053 kb on - strand, within Dshi_1125 at 1151.053 kb on - strand, within Dshi_1125 at 1151.100 kb on - strand, within Dshi_1125 at 1151.102 kb on + strand, within Dshi_1125 at 1151.102 kb on + strand, within Dshi_1125 at 1151.139 kb on + strand, within Dshi_1125 at 1151.162 kb on + strand, within Dshi_1125 at 1151.203 kb on - strand, within Dshi_1125 at 1151.236 kb on - strand, within Dshi_1125 at 1151.241 kb on - strand, within Dshi_1125 at 1151.242 kb on - strand, within Dshi_1125 at 1151.252 kb on - strand, within Dshi_1125 at 1151.256 kb on + strand, within Dshi_1125 at 1151.301 kb on - strand, within Dshi_1125 at 1151.371 kb on + strand at 1151.371 kb on + strand at 1151.379 kb on - strand at 1151.463 kb on + strand at 1151.508 kb on + strand at 1151.516 kb on - strand at 1151.516 kb on - strand at 1151.542 kb on + strand at 1151.557 kb on - strand at 1151.678 kb on + strand, within Dshi_1126 at 1151.817 kb on - strand, within Dshi_1126 at 1151.865 kb on + strand, within Dshi_1126 at 1151.873 kb on - strand, within Dshi_1126 at 1152.035 kb on - strand, within Dshi_1126 at 1152.094 kb on + strand, within Dshi_1126 at 1152.111 kb on - strand, within Dshi_1126 at 1152.185 kb on + strand, within Dshi_1126 at 1152.203 kb on - strand, within Dshi_1126 at 1152.319 kb on - strand, within Dshi_1126 at 1152.467 kb on - strand, within Dshi_1126 at 1152.504 kb on + strand, within Dshi_1126 at 1152.512 kb on - strand, within Dshi_1126 at 1152.512 kb on - strand, within Dshi_1126 at 1152.657 kb on + strand, within Dshi_1126 at 1152.687 kb on + strand, within Dshi_1126 at 1152.701 kb on - strand, within Dshi_1126 at 1152.716 kb on - strand, within Dshi_1126 at 1152.868 kb on - strand at 1152.914 kb on + strand at 1152.922 kb on - strand at 1153.027 kb on - strand at 1153.108 kb on - strand, within Dshi_1127 at 1153.291 kb on - strand, within Dshi_1127 at 1153.296 kb on - strand, within Dshi_1127 at 1153.317 kb on - strand, within Dshi_1127 at 1153.380 kb on + strand, within Dshi_1127 at 1153.424 kb on + strand, within Dshi_1127 at 1153.495 kb on - strand, within Dshi_1127 at 1153.505 kb on - strand, within Dshi_1127 at 1153.515 kb on - strand, within Dshi_1127 at 1153.522 kb on - strand, within Dshi_1127 at 1153.542 kb on - strand, within Dshi_1127 at 1153.552 kb on - strand, within Dshi_1127 at 1153.577 kb on + strand, within Dshi_1127 at 1153.585 kb on - strand, within Dshi_1127 at 1153.659 kb on - strand, within Dshi_1127 at 1153.754 kb on - strand, within Dshi_1127 at 1153.838 kb on + strand, within Dshi_1127 at 1153.868 kb on - strand, within Dshi_1127 at 1153.887 kb on - strand, within Dshi_1127
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,150,483 - -1.5 1,150,582 - Dshi_1125 0.11 -0.8 1,150,587 + Dshi_1125 0.11 +0.6 1,150,608 - Dshi_1125 0.13 -2.8 1,150,651 + Dshi_1125 0.18 -1.0 1,150,713 + Dshi_1125 0.24 +2.4 1,150,740 - Dshi_1125 0.27 -1.1 1,150,925 + Dshi_1125 0.46 -0.7 1,150,978 + Dshi_1125 0.52 +0.1 1,150,978 + Dshi_1125 0.52 +1.9 1,151,053 - Dshi_1125 0.59 -1.0 1,151,053 - Dshi_1125 0.59 -1.5 1,151,053 - Dshi_1125 0.59 +0.5 1,151,100 - Dshi_1125 0.64 -0.9 1,151,102 + Dshi_1125 0.64 -1.0 1,151,102 + Dshi_1125 0.64 -0.8 1,151,139 + Dshi_1125 0.68 -0.8 1,151,162 + Dshi_1125 0.71 -0.4 1,151,203 - Dshi_1125 0.75 +0.2 1,151,236 - Dshi_1125 0.78 -0.6 1,151,241 - Dshi_1125 0.79 -0.0 1,151,242 - Dshi_1125 0.79 -2.6 1,151,252 - Dshi_1125 0.80 -0.3 1,151,256 + Dshi_1125 0.80 +0.4 1,151,301 - Dshi_1125 0.85 -0.8 1,151,371 + +0.1 1,151,371 + +0.1 1,151,379 - +0.5 1,151,463 + -0.5 1,151,508 + -2.1 1,151,516 - -0.1 1,151,516 - -0.3 1,151,542 + -0.5 1,151,557 - +2.5 1,151,678 + Dshi_1126 0.16 -0.6 1,151,817 - Dshi_1126 0.25 +0.3 1,151,865 + Dshi_1126 0.29 +0.9 1,151,873 - Dshi_1126 0.29 -0.4 1,152,035 - Dshi_1126 0.40 +0.2 1,152,094 + Dshi_1126 0.44 -1.9 1,152,111 - Dshi_1126 0.45 -0.0 1,152,185 + Dshi_1126 0.51 +2.1 1,152,203 - Dshi_1126 0.52 -2.3 1,152,319 - Dshi_1126 0.60 -0.6 1,152,467 - Dshi_1126 0.70 -1.1 1,152,504 + Dshi_1126 0.73 +0.5 1,152,512 - Dshi_1126 0.73 +0.3 1,152,512 - Dshi_1126 0.73 -2.6 1,152,657 + Dshi_1126 0.83 -1.8 1,152,687 + Dshi_1126 0.85 +3.3 1,152,701 - Dshi_1126 0.86 -1.0 1,152,716 - Dshi_1126 0.87 -1.8 1,152,868 - +0.3 1,152,914 + +0.5 1,152,922 - -1.1 1,153,027 - -1.9 1,153,108 - Dshi_1127 0.14 -1.5 1,153,291 - Dshi_1127 0.28 +0.9 1,153,296 - Dshi_1127 0.29 -0.5 1,153,317 - Dshi_1127 0.30 -0.2 1,153,380 + Dshi_1127 0.35 -0.5 1,153,424 + Dshi_1127 0.38 +1.4 1,153,495 - Dshi_1127 0.44 -0.0 1,153,505 - Dshi_1127 0.44 -0.6 1,153,515 - Dshi_1127 0.45 -0.1 1,153,522 - Dshi_1127 0.46 +1.5 1,153,542 - Dshi_1127 0.47 +0.3 1,153,552 - Dshi_1127 0.48 +0.5 1,153,577 + Dshi_1127 0.50 +1.3 1,153,585 - Dshi_1127 0.51 -0.2 1,153,659 - Dshi_1127 0.56 +1.6 1,153,754 - Dshi_1127 0.64 -0.4 1,153,838 + Dshi_1127 0.70 +0.1 1,153,868 - Dshi_1127 0.72 -0.2 1,153,887 - Dshi_1127 0.74 -0.1
Or see this region's nucleotide sequence