Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0921

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0919 and Dshi_0920 overlap by 4 nucleotidesDshi_0920 and Dshi_0921 are separated by 22 nucleotidesDshi_0921 and Dshi_0922 overlap by 4 nucleotidesDshi_0922 and Dshi_0923 overlap by 1 nucleotides Dshi_0919: Dshi_0919 - beta-lactamase domain protein (RefSeq), at 943,401 to 944,207 _0919 Dshi_0920: Dshi_0920 - hydrolase, TatD family (RefSeq), at 944,204 to 945,013 _0920 Dshi_0921: Dshi_0921 - DNA-directed DNA polymerase (RefSeq), at 945,036 to 946,181 _0921 Dshi_0922: Dshi_0922 - dTMP kinase (RefSeq), at 946,178 to 946,801 _0922 Dshi_0923: Dshi_0923 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 946,801 to 947,982 _0923 Position (kb) 945 946 947Strain fitness (log2 ratio) -2 -1 0 1 2 3at 944.043 kb on - strand, within Dshi_0919at 944.426 kb on + strand, within Dshi_0920at 944.516 kb on - strand, within Dshi_0920at 944.559 kb on - strand, within Dshi_0920at 944.588 kb on - strand, within Dshi_0920at 944.742 kb on + strand, within Dshi_0920at 944.841 kb on - strand, within Dshi_0920at 945.017 kb on - strandat 945.071 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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944,043 - Dshi_0919 0.80 -0.4
944,426 + Dshi_0920 0.27 +1.2
944,516 - Dshi_0920 0.39 -1.0
944,559 - Dshi_0920 0.44 -0.4
944,588 - Dshi_0920 0.47 -2.7
944,742 + Dshi_0920 0.66 +0.6
944,841 - Dshi_0920 0.79 -1.2
945,017 - +2.6
945,071 - +3.4

Or see this region's nucleotide sequence