Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0918 and Dshi_0919 overlap by 4 nucleotides Dshi_0919 and Dshi_0920 overlap by 4 nucleotides Dshi_0920 and Dshi_0921 are separated by 22 nucleotides
Dshi_0918: Dshi_0918 - Auxin Efflux Carrier (RefSeq), at 942,472 to 943,404
_0918
Dshi_0919: Dshi_0919 - beta-lactamase domain protein (RefSeq), at 943,401 to 944,207
_0919
Dshi_0920: Dshi_0920 - hydrolase, TatD family (RefSeq), at 944,204 to 945,013
_0920
Dshi_0921: Dshi_0921 - DNA-directed DNA polymerase (RefSeq), at 945,036 to 946,181
_0921
Position (kb) 944
945
946 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 943.227 kb on - strand, within Dshi_0918 at 943.227 kb on - strand, within Dshi_0918 at 943.282 kb on + strand, within Dshi_0918 at 943.559 kb on + strand, within Dshi_0919 at 943.560 kb on + strand, within Dshi_0919 at 943.560 kb on + strand, within Dshi_0919 at 943.634 kb on - strand, within Dshi_0919 at 943.656 kb on - strand, within Dshi_0919 at 943.802 kb on - strand, within Dshi_0919 at 943.866 kb on + strand, within Dshi_0919 at 943.968 kb on + strand, within Dshi_0919 at 943.976 kb on - strand, within Dshi_0919 at 943.977 kb on - strand, within Dshi_0919 at 943.989 kb on - strand, within Dshi_0919 at 944.043 kb on - strand, within Dshi_0919 at 944.426 kb on + strand, within Dshi_0920 at 944.516 kb on - strand, within Dshi_0920 at 944.559 kb on - strand, within Dshi_0920 at 944.588 kb on - strand, within Dshi_0920 at 944.742 kb on + strand, within Dshi_0920 at 944.841 kb on - strand, within Dshi_0920 at 945.017 kb on - strand at 945.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 943,227 - Dshi_0918 0.81 -1.4 943,227 - Dshi_0918 0.81 +2.7 943,282 + Dshi_0918 0.87 -1.3 943,559 + Dshi_0919 0.20 -0.1 943,560 + Dshi_0919 0.20 +1.0 943,560 + Dshi_0919 0.20 +1.6 943,634 - Dshi_0919 0.29 -0.6 943,656 - Dshi_0919 0.32 +0.5 943,802 - Dshi_0919 0.50 -1.7 943,866 + Dshi_0919 0.58 +1.6 943,968 + Dshi_0919 0.70 -0.7 943,976 - Dshi_0919 0.71 -0.7 943,977 - Dshi_0919 0.71 +0.6 943,989 - Dshi_0919 0.73 -1.5 944,043 - Dshi_0919 0.80 -0.4 944,426 + Dshi_0920 0.27 +1.2 944,516 - Dshi_0920 0.39 -1.0 944,559 - Dshi_0920 0.44 -0.4 944,588 - Dshi_0920 0.47 -2.7 944,742 + Dshi_0920 0.66 +0.6 944,841 - Dshi_0920 0.79 -1.2 945,017 - +2.6 945,071 - +3.4
Or see this region's nucleotide sequence