Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0909

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0907 and Dshi_0908 overlap by 4 nucleotidesDshi_0908 and Dshi_0909 overlap by 4 nucleotidesDshi_0909 and Dshi_0910 overlap by 4 nucleotidesDshi_0910 and Dshi_0911 overlap by 4 nucleotides Dshi_0907: Dshi_0907 - ABC transporter related (RefSeq), at 930,927 to 931,655 _0907 Dshi_0908: Dshi_0908 - transcriptional activator, TenA family (RefSeq), at 931,652 to 932,350 _0908 Dshi_0909: Dshi_0909 - NMT1/THI5 like domain protein (RefSeq), at 932,347 to 933,282 _0909 Dshi_0910: Dshi_0910 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 933,279 to 934,244 _0910 Dshi_0911: Dshi_0911 - Thiamine-phosphate diphosphorylase (RefSeq), at 934,241 to 934,840 _0911 Position (kb) 932 933 934Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 931.442 kb on + strand, within Dshi_0907at 931.554 kb on + strand, within Dshi_0907at 931.631 kb on - strandat 931.887 kb on + strand, within Dshi_0908at 931.924 kb on - strand, within Dshi_0908at 931.999 kb on - strand, within Dshi_0908at 932.107 kb on - strand, within Dshi_0908at 932.145 kb on + strand, within Dshi_0908at 932.145 kb on + strand, within Dshi_0908at 932.153 kb on - strand, within Dshi_0908at 932.172 kb on + strand, within Dshi_0908at 932.446 kb on - strand, within Dshi_0909at 932.644 kb on - strand, within Dshi_0909at 932.651 kb on + strand, within Dshi_0909at 932.659 kb on - strand, within Dshi_0909at 932.688 kb on - strand, within Dshi_0909at 932.821 kb on - strand, within Dshi_0909at 932.888 kb on - strand, within Dshi_0909at 933.202 kb on + strandat 933.210 kb on - strandat 933.215 kb on + strandat 933.250 kb on + strandat 933.258 kb on - strandat 933.384 kb on + strand, within Dshi_0910at 933.446 kb on - strand, within Dshi_0910at 933.452 kb on + strand, within Dshi_0910at 933.488 kb on + strand, within Dshi_0910at 933.489 kb on + strand, within Dshi_0910at 933.497 kb on - strand, within Dshi_0910at 933.645 kb on - strand, within Dshi_0910at 933.715 kb on - strand, within Dshi_0910at 933.867 kb on - strand, within Dshi_0910at 934.109 kb on - strand, within Dshi_0910at 934.125 kb on + strand, within Dshi_0910at 934.133 kb on - strand, within Dshi_0910at 934.215 kb on - strandat 934.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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931,442 + Dshi_0907 0.71 +0.7
931,554 + Dshi_0907 0.86 +0.1
931,631 - -2.3
931,887 + Dshi_0908 0.34 -1.0
931,924 - Dshi_0908 0.39 -0.9
931,999 - Dshi_0908 0.50 +0.1
932,107 - Dshi_0908 0.65 -0.3
932,145 + Dshi_0908 0.71 +0.7
932,145 + Dshi_0908 0.71 -1.9
932,153 - Dshi_0908 0.72 +3.8
932,172 + Dshi_0908 0.74 -1.2
932,446 - Dshi_0909 0.11 -0.3
932,644 - Dshi_0909 0.32 -0.3
932,651 + Dshi_0909 0.32 +1.7
932,659 - Dshi_0909 0.33 -0.3
932,688 - Dshi_0909 0.36 -0.1
932,821 - Dshi_0909 0.51 +0.7
932,888 - Dshi_0909 0.58 +1.1
933,202 + -0.9
933,210 - +0.2
933,215 + -0.3
933,250 + -0.9
933,258 - +0.7
933,384 + Dshi_0910 0.11 -0.7
933,446 - Dshi_0910 0.17 -1.1
933,452 + Dshi_0910 0.18 +2.7
933,488 + Dshi_0910 0.22 +1.7
933,489 + Dshi_0910 0.22 -0.7
933,497 - Dshi_0910 0.23 +0.7
933,645 - Dshi_0910 0.38 -2.5
933,715 - Dshi_0910 0.45 -1.7
933,867 - Dshi_0910 0.61 -0.8
934,109 - Dshi_0910 0.86 -2.2
934,125 + Dshi_0910 0.88 +0.7
934,133 - Dshi_0910 0.88 -0.3
934,215 - -0.9
934,281 + +0.7

Or see this region's nucleotide sequence