Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0907 and Dshi_0908 overlap by 4 nucleotides Dshi_0908 and Dshi_0909 overlap by 4 nucleotides Dshi_0909 and Dshi_0910 overlap by 4 nucleotides Dshi_0910 and Dshi_0911 overlap by 4 nucleotides
Dshi_0907: Dshi_0907 - ABC transporter related (RefSeq), at 930,927 to 931,655
_0907
Dshi_0908: Dshi_0908 - transcriptional activator, TenA family (RefSeq), at 931,652 to 932,350
_0908
Dshi_0909: Dshi_0909 - NMT1/THI5 like domain protein (RefSeq), at 932,347 to 933,282
_0909
Dshi_0910: Dshi_0910 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 933,279 to 934,244
_0910
Dshi_0911: Dshi_0911 - Thiamine-phosphate diphosphorylase (RefSeq), at 934,241 to 934,840
_0911
Position (kb)
932
933
934 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 931.442 kb on + strand, within Dshi_0907 at 931.554 kb on + strand, within Dshi_0907 at 931.631 kb on - strand at 931.887 kb on + strand, within Dshi_0908 at 931.924 kb on - strand, within Dshi_0908 at 931.999 kb on - strand, within Dshi_0908 at 932.107 kb on - strand, within Dshi_0908 at 932.145 kb on + strand, within Dshi_0908 at 932.145 kb on + strand, within Dshi_0908 at 932.153 kb on - strand, within Dshi_0908 at 932.172 kb on + strand, within Dshi_0908 at 932.446 kb on - strand, within Dshi_0909 at 932.644 kb on - strand, within Dshi_0909 at 932.651 kb on + strand, within Dshi_0909 at 932.659 kb on - strand, within Dshi_0909 at 932.688 kb on - strand, within Dshi_0909 at 932.821 kb on - strand, within Dshi_0909 at 932.888 kb on - strand, within Dshi_0909 at 933.202 kb on + strand at 933.210 kb on - strand at 933.215 kb on + strand at 933.250 kb on + strand at 933.258 kb on - strand at 933.384 kb on + strand, within Dshi_0910 at 933.446 kb on - strand, within Dshi_0910 at 933.452 kb on + strand, within Dshi_0910 at 933.488 kb on + strand, within Dshi_0910 at 933.489 kb on + strand, within Dshi_0910 at 933.497 kb on - strand, within Dshi_0910 at 933.645 kb on - strand, within Dshi_0910 at 933.715 kb on - strand, within Dshi_0910 at 933.867 kb on - strand, within Dshi_0910 at 934.109 kb on - strand, within Dshi_0910 at 934.125 kb on + strand, within Dshi_0910 at 934.133 kb on - strand, within Dshi_0910 at 934.215 kb on - strand at 934.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 931,442 + Dshi_0907 0.71 +0.7 931,554 + Dshi_0907 0.86 +0.1 931,631 - -2.3 931,887 + Dshi_0908 0.34 -1.0 931,924 - Dshi_0908 0.39 -0.9 931,999 - Dshi_0908 0.50 +0.1 932,107 - Dshi_0908 0.65 -0.3 932,145 + Dshi_0908 0.71 +0.7 932,145 + Dshi_0908 0.71 -1.9 932,153 - Dshi_0908 0.72 +3.8 932,172 + Dshi_0908 0.74 -1.2 932,446 - Dshi_0909 0.11 -0.3 932,644 - Dshi_0909 0.32 -0.3 932,651 + Dshi_0909 0.32 +1.7 932,659 - Dshi_0909 0.33 -0.3 932,688 - Dshi_0909 0.36 -0.1 932,821 - Dshi_0909 0.51 +0.7 932,888 - Dshi_0909 0.58 +1.1 933,202 + -0.9 933,210 - +0.2 933,215 + -0.3 933,250 + -0.9 933,258 - +0.7 933,384 + Dshi_0910 0.11 -0.7 933,446 - Dshi_0910 0.17 -1.1 933,452 + Dshi_0910 0.18 +2.7 933,488 + Dshi_0910 0.22 +1.7 933,489 + Dshi_0910 0.22 -0.7 933,497 - Dshi_0910 0.23 +0.7 933,645 - Dshi_0910 0.38 -2.5 933,715 - Dshi_0910 0.45 -1.7 933,867 - Dshi_0910 0.61 -0.8 934,109 - Dshi_0910 0.86 -2.2 934,125 + Dshi_0910 0.88 +0.7 934,133 - Dshi_0910 0.88 -0.3 934,215 - -0.9 934,281 + +0.7
Or see this region's nucleotide sequence